Difference between revisions of "4-P-PANTOTHENATE"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLCROTONYL-COA-CARBOXYLASE-RXN METHYLCROTONYL-COA-CARBOXYLASE-RXN] == * direction: ** LEFT-TO-R...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLUCISOM-RXN PGLUCISOM-RXN] == * direction: ** REVERSIBLE * common name: ** glucose-6-phosphate_is...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=METHYLCROTONYL-COA-CARBOXYLASE-RXN METHYLCROTONYL-COA-CARBOXYLASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PGLUCISOM-RXN PGLUCISOM-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
 
* common name:
 
* common name:
−
** Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial
+
** glucose-6-phosphate_isomerase
−
** propionyl-_carboxylase_alpha_chain
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.4.1.4 EC-6.4.1.4]
+
** [http://enzyme.expasy.org/EC/5.3.1.9 EC-5.3.1.9]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[HCO3]][c] '''+''' 1 [[3-METHYL-CROTONYL-COA]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[TRANS-3-METHYL-GLUTACONYL-COA]][c]
+
** 1 [[D-glucopyranose-6-phosphate]][c] '''<=>''' 1 [[FRUCTOSE-6P]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 hydrogencarbonate[c] '''+''' 1 3-methylcrotonyl-CoA[c] '''=>''' 1 ADP[c] '''+''' 1 phosphate[c] '''+''' 1 H+[c] '''+''' 1 3-methylglutaconyl-CoA[c]
+
** 1 D-glucopyranose 6-phosphate[c] '''<=>''' 1 &beta;-D-fructofuranose 6-phosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14499]]
+
* Gene: [[Tiso_gene_19480]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-experimental_annotation]]
−
** [[pantograph]]-[[creinhardtii]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_5029]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
* [[Tiso_gene_10675]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[LEU-DEG2-PWY]], L-leucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=LEU-DEG2-PWY LEU-DEG2-PWY]
+
* [[RUMP-PWY]], formaldehyde oxidation I: [http://metacyc.org/META/NEW-IMAGE?object=RUMP-PWY RUMP-PWY]
−
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOLYSIS GLYCOLYSIS]
 +
** '''12''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-3801]], sucrose degradation II (sucrose synthase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3801 PWY-3801]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
 +
** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
 +
** '''11''' reactions found over '''15''' reactions in the full pathway
 +
* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6142 PWY-6142]
 +
** '''8''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-5659]], GDP-mannose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5659 PWY-5659]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6981]], chitin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6981 PWY-6981]
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 +
* [[P341-PWY]], glycolysis V (Pyrococcus): [http://metacyc.org/META/NEW-IMAGE?object=P341-PWY P341-PWY]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]], gluconeogenesis I: [http://metacyc.org/META/NEW-IMAGE?object=GLUCONEO-PWY GLUCONEO-PWY]
 +
** '''13''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7347]], sucrose biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7347 PWY-7347]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY66-399]], gluconeogenesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY66-399 PWY66-399]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[SUCSYN-PWY]], sucrose biosynthesis I (from photosynthesis): [http://metacyc.org/META/NEW-IMAGE?object=SUCSYN-PWY SUCSYN-PWY]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[UDPNAGSYN-PWY]], UDP-N-acetyl-D-glucosamine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=UDPNAGSYN-PWY UDPNAGSYN-PWY]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-621]], sucrose degradation III (sucrose invertase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-621 PWY-621]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-622]], starch biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-622 PWY-622]
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5054]], sorbitol biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5054 PWY-5054]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6992]], 1,5-anhydrofructose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6992 PWY-6992]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5384]], sucrose degradation IV (sucrose phosphorylase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5384 PWY-5384]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7238]], sucrose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5514]], UDP-N-acetyl-D-galactosamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5514 PWY-5514]
 +
** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
 +
** '''14''' reactions found over '''18''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
+
** Source: [[orthology-esiliculosus]]
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-creinhardtii]]
+
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13589 13589]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11816 11816]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04138 R04138]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00771 R00771]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/Q40121 Q40121]
+
** [http://www.uniprot.org/uniprot/P06744 P06744]
−
** [http://www.uniprot.org/uniprot/Q42777 Q42777]
+
** [http://www.uniprot.org/uniprot/P28718 P28718]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/Q7LZP0 Q7LZP0]
−
{{#set: common name=Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial}}
+
** [http://www.uniprot.org/uniprot/O83488 O83488]
−
{{#set: common name=propionyl-_carboxylase_alpha_chain}}
+
** [http://www.uniprot.org/uniprot/Q9JTW1 Q9JTW1]
−
{{#set: ec number=EC-6.4.1.4}}
+
** [http://www.uniprot.org/uniprot/Q59000 Q59000]
−
{{#set: gene associated=Tiso_gene_14499|Tiso_gene_5029|Tiso_gene_10675}}
+
** [http://www.uniprot.org/uniprot/Q9PMD4 Q9PMD4]
−
{{#set: in pathway=LEU-DEG2-PWY}}
+
** [http://www.uniprot.org/uniprot/O25781 O25781]
 +
** [http://www.uniprot.org/uniprot/O84382 O84382]
 +
** [http://www.uniprot.org/uniprot/Q9JSS6 Q9JSS6]
 +
** [http://www.uniprot.org/uniprot/P81181 P81181]
 +
** [http://www.uniprot.org/uniprot/P08059 P08059]
 +
** [http://www.uniprot.org/uniprot/P50309 P50309]
 +
** [http://www.uniprot.org/uniprot/P13376 P13376]
 +
** [http://www.uniprot.org/uniprot/P13375 P13375]
 +
** [http://www.uniprot.org/uniprot/P12709 P12709]
 +
** [http://www.uniprot.org/uniprot/P0A6T1 P0A6T1]
 +
** [http://www.uniprot.org/uniprot/P06745 P06745]
 +
** [http://www.uniprot.org/uniprot/P13377 P13377]
 +
** [http://www.uniprot.org/uniprot/P12341 P12341]
 +
** [http://www.uniprot.org/uniprot/P18240 P18240]
 +
** [http://www.uniprot.org/uniprot/P29333 P29333]
 +
** [http://www.uniprot.org/uniprot/P34796 P34796]
 +
** [http://www.uniprot.org/uniprot/P34797 P34797]
 +
** [http://www.uniprot.org/uniprot/P54240 P54240]
 +
** [http://www.uniprot.org/uniprot/P54242 P54242]
 +
** [http://www.uniprot.org/uniprot/Q59088 Q59088]
 +
** [http://www.uniprot.org/uniprot/P78033 P78033]
 +
** [http://www.uniprot.org/uniprot/P52983 P52983]
 +
** [http://www.uniprot.org/uniprot/P49105 P49105]
 +
** [http://www.uniprot.org/uniprot/P42862 P42862]
 +
** [http://www.uniprot.org/uniprot/P42863 P42863]
 +
** [http://www.uniprot.org/uniprot/Q9SB57 Q9SB57]
 +
** [http://www.uniprot.org/uniprot/O82058 O82058]
 +
** [http://www.uniprot.org/uniprot/O82059 O82059]
 +
** [http://www.uniprot.org/uniprot/O61113 O61113]
 +
** [http://www.uniprot.org/uniprot/P78917 P78917]
 +
** [http://www.uniprot.org/uniprot/Q9RMC1 Q9RMC1]
 +
** [http://www.uniprot.org/uniprot/Q9X670 Q9X670]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=glucose-6-phosphate_isomerase}}
 +
{{#set: ec number=EC-5.3.1.9}}
 +
{{#set: gene associated=Tiso_gene_19480}}
 +
{{#set: in pathway=RUMP-PWY|GLYCOLYSIS|PWY-3801|PWY-7385|P124-PWY|PWY-6142|PWY-5659|PWY-6981|P341-PWY|GLUCONEO-PWY|PWY-7347|PWY66-399|SUCSYN-PWY|UDPNAGSYN-PWY|PWY-621|PWY-622|PWY-5054|PWY-6992|ANAGLYCOLYSIS-PWY|PWY-5384|PWY-7238|PWY-5514|P122-PWY}}
 
{{#set: reconstruction category=orthology|annotation}}
 
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=orthology-creinhardtii|orthology-athaliana|annotation-in-silico_annotation|annotation-experimental_annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:26, 21 March 2018

Reaction PGLUCISOM-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • glucose-6-phosphate_isomerase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • RUMP-PWY, formaldehyde oxidation I: RUMP-PWY
    • 3 reactions found over 6 reactions in the full pathway
  • GLYCOLYSIS, glycolysis I (from glucose 6-phosphate): GLYCOLYSIS
    • 12 reactions found over 12 reactions in the full pathway
  • PWY-3801, sucrose degradation II (sucrose synthase): PWY-3801
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7385, 1,3-propanediol biosynthesis (engineered): PWY-7385
    • 5 reactions found over 9 reactions in the full pathway
  • P124-PWY, Bifidobacterium shunt: P124-PWY
    • 11 reactions found over 15 reactions in the full pathway
  • PWY-6142, gluconeogenesis II (Methanobacterium thermoautotrophicum): PWY-6142
    • 8 reactions found over 14 reactions in the full pathway
  • PWY-5659, GDP-mannose biosynthesis: PWY-5659
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-6981, chitin biosynthesis: PWY-6981
    • 4 reactions found over 8 reactions in the full pathway
  • P341-PWY, glycolysis V (Pyrococcus): P341-PWY
    • 6 reactions found over 9 reactions in the full pathway
  • GLUCONEO-PWY, gluconeogenesis I: GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • PWY-7347, sucrose biosynthesis III: PWY-7347
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-399, gluconeogenesis III: PWY66-399
    • 10 reactions found over 12 reactions in the full pathway
  • SUCSYN-PWY, sucrose biosynthesis I (from photosynthesis): SUCSYN-PWY
    • 7 reactions found over 9 reactions in the full pathway
  • UDPNAGSYN-PWY, UDP-N-acetyl-D-glucosamine biosynthesis I: UDPNAGSYN-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-621, sucrose degradation III (sucrose invertase): PWY-621
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-622, starch biosynthesis: PWY-622
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-5054, sorbitol biosynthesis I: PWY-5054
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6992, 1,5-anhydrofructose degradation: PWY-6992
    • 3 reactions found over 5 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY, glycolysis III (from glucose): ANAGLYCOLYSIS-PWY
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-5384, sucrose degradation IV (sucrose phosphorylase): PWY-5384
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7238, sucrose biosynthesis II: PWY-7238
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-5514, UDP-N-acetyl-D-galactosamine biosynthesis II: PWY-5514
    • 5 reactions found over 7 reactions in the full pathway
  • P122-PWY, heterolactic fermentation: P122-PWY
    • 14 reactions found over 18 reactions in the full pathway

Reconstruction information

External links





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