Difference between revisions of "S-CD-Apo-SP-Complex"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5661 PWY-5661] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-27...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14116 RXN-14116] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** delta-1-pyrroline-5-...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-5661 PWY-5661] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14116 RXN-14116] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2759 TAX-2759]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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* common name:
 
* common name:
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** GDP-glucose biosynthesis
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** ORF
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** delta-1-pyrroline-5-carboxylate_synthase
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** delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial
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* ec number:
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** [http://enzyme.expasy.org/EC/1.2.1.88 EC-1.2.1.88]
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''3''' reactions in the full pathway
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* With identifiers:
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* [[GLUCOKIN-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''+''' 1 [[NAD]][c] '''=>''' 2 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[GLT]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_3107]]
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** 1 H2O[c] '''+''' 1 L-glutamate-5-semialdehyde[c] '''+''' 1 NAD+[c] '''=>''' 2 H+[c] '''+''' 1 NADH[c] '''+''' 1 L-glutamate[c]
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*** [[Tiso_gene_1303]]
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** 4 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_6952]]
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*** [[orthology-synechocystis]]
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** Source: [[orthology-synechocystis]]
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_3513]]
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* [[PHOSPHOGLUCMUT-RXN]]
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** Source: [[orthology-synechocystis]]
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** 2 associated gene(s):
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* Gene: [[Tiso_gene_7381]]
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*** [[Tiso_gene_13477]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_4816]]
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*** Assignment: EC-NUMBER
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** 3 reconstruction source(s) associated:
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** Source: [[annotation-experimental_annotation]]
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*** [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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*** [[manual-primary_network]]
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* Gene: [[Tiso_gene_16634]]
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*** [[annotation-experimental_annotation]]
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** Source: [[annotation-in-silico_annotation]]
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== Reaction(s) not found ==
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*** Assignment: EC-NUMBER
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* [http://metacyc.org/META/NEW-IMAGE?object=2.7.7.34-RXN 2.7.7.34-RXN]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_18338]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_886]]
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** Source: [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_9680]]
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** Source: [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_18337]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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== Pathways  ==
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* [[PROUT-PWY]], L-proline degradation: [http://metacyc.org/META/NEW-IMAGE?object=PROUT-PWY PROUT-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6853]], ethylene biosynthesis II (microbes): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6853 PWY-6853]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2759}}
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* RHEA:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30236 30236]
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{{#set: taxonomic range=TAX-2157}}
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* LIGAND-RXN:
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{{#set: common name=GDP-glucose biosynthesis}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00245 R00245]
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{{#set: reaction found=2}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: total reaction=3}}
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{{#set: common name=ORF}}
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{{#set: completion rate=67.0}}
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{{#set: common name=delta-1-pyrroline-5-carboxylate_synthase}}
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{{#set: common name=delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial}}
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{{#set: ec number=EC-1.2.1.88}}
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{{#set: gene associated=Tiso_gene_6952|Tiso_gene_3513|Tiso_gene_7381|Tiso_gene_16634|Tiso_gene_18338|Tiso_gene_886|Tiso_gene_9680|Tiso_gene_18337}}
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{{#set: in pathway=PROUT-PWY|ARGASEDEG-PWY|PWY-6853}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-synechocystis}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:26, 21 March 2018

Reaction RXN-14116

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • delta-1-pyrroline-5-carboxylate_synthase
    • delta-1-pyrroline-5-carboxylate_dehydrogenase_mitochondrial
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PROUT-PWY, L-proline degradation: PROUT-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • ARGASEDEG-PWY, L-arginine degradation I (arginase pathway): ARGASEDEG-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6853, ethylene biosynthesis II (microbes): PWY-6853
    • 2 reactions found over 5 reactions in the full pathway

Reconstruction information

External links






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