Difference between revisions of "OBFOOLor"

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(Created page with "Category:Gene == Gene Tiso_gene_4032 == * left end position: ** 12518 * transcription direction: ** NEGATIVE * right end position: ** 15520 * centisome position: ** 80.444...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAICARSYN-RXN SAICARSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** phosphoribosylamino...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_4032 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SAICARSYN-RXN SAICARSYN-RXN] ==
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* left end position:
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* direction:
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** 12518
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** NEGATIVE
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** phosphoribosylaminoimidazole-succinocarboxamide_synthase
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* right end position:
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* ec number:
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** 15520
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** [http://enzyme.expasy.org/EC/6.3.2.6 EC-6.3.2.6]
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* centisome position:
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** 80.4447   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[NITRILE-HYDRATASE-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[L-ASPARTATE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[PHOSPHORIBOSYL-CARBOXY-AMINOIMIDAZOLE]][c] '''=>''' 1 [[P-RIBOSYL-4-SUCCCARB-AMINOIMIDAZOLE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
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***ec-number
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* With common name(s):
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* [[R310-RXN]]
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** 1 L-aspartate[c] '''+''' 1 ATP[c] '''+''' 1 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate[c] '''=>''' 1 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole[c] '''+''' 1 ADP[c] '''+''' 1 H+[c] '''+''' 1 phosphate[c]
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** in-silico_annotation
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***ec-number
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== Genes associated with this reaction  ==
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* [[R313-RXN]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* Gene: [[Tiso_gene_20436]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-14725]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** in-silico_annotation
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** Source: [[orthology-creinhardtii]]
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***ec-number
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== Pathways  ==
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* [[RXN-14726]]
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* [[PWY-6123]], inosine-5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6123 PWY-6123]
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** in-silico_annotation
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** '''5''' reactions found over '''6''' reactions in the full pathway
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***ec-number
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* [[PWY-6124]], inosine-5'-phosphate biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6124 PWY-6124]
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* [[RXN-17609]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** in-silico_annotation
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* [[PWY-7234]], inosine-5'-phosphate biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7234 PWY-7234]
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***ec-number
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[RXN-7567]]
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== Reconstruction information  ==
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** in-silico_annotation
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* Category: [[orthology]]
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***ec-number
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** Source: [[orthology-creinhardtii]]
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== Pathways associated ==
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*** Tool: [[pantograph]]
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* [[PWY-581]]
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* Category: [[manual]]
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* [[PWY-5025]]
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** Source: [[manual-primary_network]]
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* [[P345-PWY]]
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* Category: [[annotation]]
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* [[PWY-7308]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=12518}}
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* RHEA:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22628 22628]
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{{#set: right end position=15520}}
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* LIGAND-RXN:
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{{#set: centisome position=80.4447    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R04591 R04591]
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{{#set: reaction associated=NITRILE-HYDRATASE-RXN|R310-RXN|R313-RXN|RXN-14725|RXN-14726|RXN-17609|RXN-7567}}
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* UNIPROT:
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{{#set: pathway associated=PWY-581|PWY-5025|P345-PWY|PWY-7308}}
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** [http://www.uniprot.org/uniprot/Q07296 Q07296]
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** [http://www.uniprot.org/uniprot/Q9PHZ9 Q9PHZ9]
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** [http://www.uniprot.org/uniprot/P0A7D7 P0A7D7]
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** [http://www.uniprot.org/uniprot/P12046 P12046]
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** [http://www.uniprot.org/uniprot/Q58987 Q58987]
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** [http://www.uniprot.org/uniprot/Q9JV73 Q9JV73]
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** [http://www.uniprot.org/uniprot/P50124 P50124]
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** [http://www.uniprot.org/uniprot/P27602 P27602]
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** [http://www.uniprot.org/uniprot/P27616 P27616]
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** [http://www.uniprot.org/uniprot/P22234 P22234]
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** [http://www.uniprot.org/uniprot/P73471 P73471]
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** [http://www.uniprot.org/uniprot/Q9R7D5 Q9R7D5]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=phosphoribosylaminoimidazole-succinocarboxamide_synthase}}
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{{#set: ec number=EC-6.3.2.6}}
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{{#set: gene associated=Tiso_gene_20436}}
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{{#set: in pathway=PWY-6123|PWY-6124|PWY-7234}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=orthology-creinhardtii|manual-primary_network|annotation-in-silico_annotation}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:26, 21 March 2018

Reaction SAICARSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • phosphoribosylaminoimidazole-succinocarboxamide_synthase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6123, inosine-5'-phosphate biosynthesis I: PWY-6123
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-6124, inosine-5'-phosphate biosynthesis II: PWY-6124
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7234, inosine-5'-phosphate biosynthesis III: PWY-7234
    • 4 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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