Difference between revisions of "UTCY"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7664 PWY-7664] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2] *...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] == * direction: ** REVERSIBLE * common name: ** succinyl-_ligase * e...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-7664 PWY-7664] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=SUCCCOASYN-RXN SUCCCOASYN-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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** REVERSIBLE
 
* common name:
 
* common name:
−
** oleate biosynthesis IV (anaerobic)
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** succinyl-_ligase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.2.1.5 EC-6.2.1.5]
 
* Synonym(s):
 
* Synonym(s):
−
** cis-7-hexadecenoate biosynthesis
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** Succinate thiokinase
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** cis-9-octadecenoate biosynthesis
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** succinyl CoA synthesis
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** (7Z)-hexadec-7-enoate biosynthesis
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−
** (9Z)-octadec-9-enoate biosynthesis
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−
** (7Z)-hexadecenoate biosynthesis
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−
** (9Z)-octadecenoate biosynthesis
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−
== Reaction(s) found ==
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== Reaction Formula ==
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'''10''' reactions found over '''14''' reactions in the full pathway
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* With identifiers:
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* [[RXN-16615]]
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** 1 [[SUC]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[Pi]][c] '''+''' 1 [[SUC-COA]][c] '''+''' 1 [[ADP]][c]
−
** 1 associated gene(s):
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* With common name(s):
−
*** [[Tiso_gene_5939]]
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** 1 succinate[c] '''+''' 1 coenzyme A[c] '''+''' 1 ATP[c] '''<=>''' 1 phosphate[c] '''+''' 1 succinyl-CoA[c] '''+''' 1 ADP[c]
−
** 2 reconstruction source(s) associated:
+
 
−
*** [[annotation-experimental_annotation]]
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== Genes associated with this reaction  ==
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*** [[annotation-in-silico_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[RXN-16616]]
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* Gene: [[Tiso_gene_15846]]
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** 2 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_9885]]
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*** Assignment: EC-NUMBER
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*** [[Tiso_gene_13083]]
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** Source: [[annotation-experimental_annotation]]
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** 2 reconstruction source(s) associated:
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*** Assignment: EC-NUMBER
−
*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-athaliana]]
−
*** [[annotation-experimental_annotation]]
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** Source: [[orthology-synechocystis]]
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* [[RXN-16619]]
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** Source: [[orthology-esiliculosus]]
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** 1 associated gene(s):
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** Source: [[orthology-creinhardtii]]
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*** [[Tiso_gene_6884]]
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* Gene: [[Tiso_gene_11866]]
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** 1 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
−
*** [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
−
* [[RXN-16621]]
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** Source: [[annotation-experimental_annotation]]
−
** 1 associated gene(s):
+
*** Assignment: EC-NUMBER
−
*** [[Tiso_gene_5939]]
+
** Source: [[orthology-athaliana]]
−
** 2 reconstruction source(s) associated:
+
** Source: [[orthology-synechocystis]]
−
*** [[annotation-experimental_annotation]]
+
** Source: [[orthology-esiliculosus]]
−
*** [[annotation-in-silico_annotation]]
+
** Source: [[orthology-creinhardtii]]
−
* [[RXN-16622]]
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== Pathways  ==
−
** 2 associated gene(s):
+
* [[PWY-5913]], partial TCA cycle (obligate autotrophs): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5913 PWY-5913]
−
*** [[Tiso_gene_13083]]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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*** [[Tiso_gene_9885]]
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* [[P42-PWY]], incomplete reductive TCA cycle: [http://metacyc.org/META/NEW-IMAGE?object=P42-PWY P42-PWY]
−
** 2 reconstruction source(s) associated:
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
*** [[annotation-in-silico_annotation]]
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* [[PWY-7384]], anaerobic energy metabolism (invertebrates, mitochondrial): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7384 PWY-7384]
−
*** [[annotation-experimental_annotation]]
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** '''7''' reactions found over '''12''' reactions in the full pathway
−
* [[RXN-16623]]
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* [[PWY-5392]], reductive TCA cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5392 PWY-5392]
−
** 1 associated gene(s):
+
** '''5''' reactions found over '''12''' reactions in the full pathway
−
*** [[Tiso_gene_6884]]
+
* [[P23-PWY]], reductive TCA cycle I: [http://metacyc.org/META/NEW-IMAGE?object=P23-PWY P23-PWY]
−
** 1 reconstruction source(s) associated:
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** '''7''' reactions found over '''12''' reactions in the full pathway
−
*** [[annotation-experimental_annotation]]
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* [[PWY-5690]], TCA cycle II (plants and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5690 PWY-5690]
−
* [[RXN-16625]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
−
** 1 associated gene(s):
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6969 PWY-6969]
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*** [[Tiso_gene_5939]]
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** '''9''' reactions found over '''12''' reactions in the full pathway
−
** 2 reconstruction source(s) associated:
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* [[PWY-6728]], methylaspartate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6728 PWY-6728]
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*** [[annotation-in-silico_annotation]]
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** '''11''' reactions found over '''18''' reactions in the full pathway
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*** [[annotation-experimental_annotation]]
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* [[PWY-5538]], pyruvate fermentation to acetate VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5538 PWY-5538]
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* [[RXN-16626]]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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** 2 associated gene(s):
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* [[PWY-5537]], pyruvate fermentation to acetate V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5537 PWY-5537]
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*** [[Tiso_gene_9885]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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*** [[Tiso_gene_13083]]
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* [[PWY66-398]], TCA cycle III (animals): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-398 PWY66-398]
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** 2 reconstruction source(s) associated:
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** '''10''' reactions found over '''11''' reactions in the full pathway
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*** [[annotation-in-silico_annotation]]
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* [[TCA]], TCA cycle I (prokaryotic): [http://metacyc.org/META/NEW-IMAGE?object=TCA TCA]
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*** [[annotation-experimental_annotation]]
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** '''7''' reactions found over '''10''' reactions in the full pathway
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* [[RXN-16627]]
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== Reconstruction information  ==
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** 1 associated gene(s):
+
* Category: [[orthology]]
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*** [[Tiso_gene_6884]]
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** Source: [[orthology-athaliana]]
−
** 1 reconstruction source(s) associated:
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*** Tool: [[pantograph]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-creinhardtii]]
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* [[RXN-9533]]
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*** Tool: [[pantograph]]
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** 6 associated gene(s):
+
** Source: [[orthology-synechocystis]]
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*** [[Tiso_gene_135]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_136]]
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** Source: [[orthology-esiliculosus]]
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*** [[Tiso_gene_13394]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_6884]]
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* Category: [[manual]]
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*** [[Tiso_gene_500]]
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** Source: [[manual-primary_network]]
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*** [[Tiso_gene_10876]]
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* Category: [[annotation]]
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** 3 reconstruction source(s) associated:
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** Source: [[annotation-in-silico_annotation]]
−
*** [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** [[manual-primary_network]]
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** Source: [[annotation-experimental_annotation]]
−
*** [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== Reaction(s) not found ==
+
−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16614 RXN-16614]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16620 RXN-16620]
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−
* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16624 RXN-16624]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-16628 RXN-16628]
+
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2}}
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* RHEA:
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{{#set: common name=oleate biosynthesis IV (anaerobic)}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17661 17661]
−
{{#set: common name=cis-7-hexadecenoate biosynthesis|cis-9-octadecenoate biosynthesis|(7Z)-hexadec-7-enoate biosynthesis|(9Z)-octadec-9-enoate biosynthesis|(7Z)-hexadecenoate biosynthesis|(9Z)-octadecenoate biosynthesis}}
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* LIGAND-RXN:
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{{#set: reaction found=10}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00405 R00405]
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{{#set: total reaction=14}}
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* UNIPROT:
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{{#set: completion rate=71.0}}
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** [http://www.uniprot.org/uniprot/O28098 O28098]
 +
** [http://www.uniprot.org/uniprot/P53594 P53594]
 +
** [http://www.uniprot.org/uniprot/O28733 O28733]
 +
** [http://www.uniprot.org/uniprot/P45101 P45101]
 +
** [http://www.uniprot.org/uniprot/P45102 P45102]
 +
** [http://www.uniprot.org/uniprot/Q9JUT0 Q9JUT0]
 +
** [http://www.uniprot.org/uniprot/Q58643 Q58643]
 +
** [http://www.uniprot.org/uniprot/O26663 O26663]
 +
** [http://www.uniprot.org/uniprot/P80886 P80886]
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** [http://www.uniprot.org/uniprot/Q9PHY1 Q9PHY1]
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** [http://www.uniprot.org/uniprot/Q9JUS9 Q9JUS9]
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** [http://www.uniprot.org/uniprot/P80865 P80865]
 +
** [http://www.uniprot.org/uniprot/Q9PHY0 Q9PHY0]
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** [http://www.uniprot.org/uniprot/O67729 O67729]
 +
** [http://www.uniprot.org/uniprot/O67546 O67546]
 +
** [http://www.uniprot.org/uniprot/P53593 P53593]
 +
** [http://www.uniprot.org/uniprot/P0AGE9 P0AGE9]
 +
** [http://www.uniprot.org/uniprot/P0A836 P0A836]
 +
** [http://www.uniprot.org/uniprot/O82662 O82662]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=succinyl-_ligase}}
 +
{{#set: ec number=EC-6.2.1.5}}
 +
{{#set: common name=Succinate thiokinase|succinyl CoA synthesis}}
 +
{{#set: gene associated=Tiso_gene_15846|Tiso_gene_11866}}
 +
{{#set: in pathway=PWY-5913|P42-PWY|PWY-7384|PWY-5392|P23-PWY|PWY-5690|PWY-6969|PWY-6728|PWY-5538|PWY-5537|PWY66-398|TCA}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:27, 21 March 2018

Reaction SUCCCOASYN-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • succinyl-_ligase
  • ec number:
  • Synonym(s):
    • Succinate thiokinase
    • succinyl CoA synthesis

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 succinate[c] + 1 coenzyme A[c] + 1 ATP[c] <=> 1 phosphate[c] + 1 succinyl-CoA[c] + 1 ADP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5913, partial TCA cycle (obligate autotrophs): PWY-5913
    • 9 reactions found over 11 reactions in the full pathway
  • P42-PWY, incomplete reductive TCA cycle: P42-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7384, anaerobic energy metabolism (invertebrates, mitochondrial): PWY-7384
    • 7 reactions found over 12 reactions in the full pathway
  • PWY-5392, reductive TCA cycle II: PWY-5392
    • 5 reactions found over 12 reactions in the full pathway
  • P23-PWY, reductive TCA cycle I: P23-PWY
    • 7 reactions found over 12 reactions in the full pathway
  • PWY-5690, TCA cycle II (plants and fungi): PWY-5690
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6969, TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase): PWY-6969
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-6728, methylaspartate cycle: PWY-6728
    • 11 reactions found over 18 reactions in the full pathway
  • PWY-5538, pyruvate fermentation to acetate VI: PWY-5538
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5537, pyruvate fermentation to acetate V: PWY-5537
    • 2 reactions found over 4 reactions in the full pathway
  • PWY66-398, TCA cycle III (animals): PWY66-398
    • 10 reactions found over 11 reactions in the full pathway
  • TCA, TCA cycle I (prokaryotic): TCA
    • 7 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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