Difference between revisions of "Tiso gene 5014"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY490-4 PWY490-4] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-21...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-4021 RXN-4021] == * direction: ** LEFT-TO-RIGHT * common name: ** sterol_methyltransferase * ec...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY490-4 PWY490-4] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-4021 RXN-4021] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2157 TAX-2157]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-2 TAX-2]
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* common name:
 
* common name:
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** L-asparagine biosynthesis III (tRNA-dependent)
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** sterol_methyltransferase
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* ec number:
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** [http://enzyme.expasy.org/EC/2.1.1.41 EC-2.1.1.41]
 
* Synonym(s):
 
* Synonym(s):
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** L-asparaginyl-tRNAasn biosynthesis via transamidation
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''2''' reactions found over '''3''' reactions in the full pathway
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* With identifiers:
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* [[6.3.5.6-RXN]]
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** 1 [[CYCLOARTENOL]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[CPD-696]][c] '''+''' 1 [[PROTON]][c]
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** 2 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_9908]]
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** 1 cycloartenol[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 24-methylenecycloartanol[c] '''+''' 1 H+[c]
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*** [[Tiso_gene_12219]]
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** 2 reconstruction source(s) associated:
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== Genes associated with this reaction  ==
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*** [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-esiliculosus]]
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* Gene: [[Tiso_gene_11849]]
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* [[RXN-12460]]
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** Source: [[annotation-in-silico_annotation]]
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** 3 associated gene(s):
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*** Assignment: AUTOMATED-NAME-MATCH
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*** [[Tiso_gene_7443]]
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* Gene: [[Tiso_gene_11850]]
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*** [[Tiso_gene_13800]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_14300]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** 3 reconstruction source(s) associated:
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** Source: [[orthology-athaliana]]
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*** [[annotation-experimental_annotation]]
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* Gene: [[Tiso_gene_12590]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-creinhardtii]]
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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== Reaction(s) not found ==
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* [[PWY-2541]], plant sterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2541 PWY-2541]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN490-3616 RXN490-3616]
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** '''10''' reactions found over '''36''' reactions in the full pathway
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* [[PWY-7155]], 7-dehydroporiferasterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7155 PWY-7155]
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** '''3''' reactions found over '''10''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-2157}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-2}}
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** [http://www.genome.jp/dbget-bin/www_bget?R07481 R07481]
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{{#set: common name=L-asparagine biosynthesis III (tRNA-dependent)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=L-asparaginyl-tRNAasn biosynthesis via transamidation}}
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{{#set: common name=sterol_methyltransferase}}
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{{#set: reaction found=2}}
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{{#set: ec number=EC-2.1.1.41}}
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{{#set: total reaction=3}}
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{{#set: gene associated=Tiso_gene_11849|Tiso_gene_11850|Tiso_gene_12590}}
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{{#set: completion rate=67.0}}
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{{#set: in pathway=PWY-2541|PWY-7155}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|orthology-creinhardtii}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:27, 21 March 2018

Reaction RXN-4021

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • sterol_methyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-2541, plant sterol biosynthesis: PWY-2541
    • 10 reactions found over 36 reactions in the full pathway
  • PWY-7155, 7-dehydroporiferasterol biosynthesis: PWY-7155
    • 3 reactions found over 10 reactions in the full pathway

Reconstruction information

External links





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