Difference between revisions of "Tiso gene 4277"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-31...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLURS-RXN GLURS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** ORF ** glutamyl-trna_synthe...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=PWY-6596 PWY-6596] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLURS-RXN GLURS-RXN] ==
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* taxonomic range:
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* direction:
−
** [http://metacyc.org/META/NEW-IMAGE?object=TAX-3193 TAX-3193]
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** adenosine nucleotides degradation I
+
** ORF
 +
** glutamyl-trna_synthetase
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.1.1.17 EC-6.1.1.17]
 
* Synonym(s):
 
* Synonym(s):
−
** purine nucleotide catabolism
 
  
−
== Reaction(s) found ==
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== Reaction Formula ==
−
'''8''' reactions found over '''8''' reactions in the full pathway
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* With identifiers:
−
* [[AMP-DEAMINASE-RXN]]
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** 1 [[GLT]][c] '''+''' 1 [[GLT-tRNAs]][c] '''+''' 1 [[ATP]][c] '''=>''' 1 [[Charged-GLT-tRNAs]][c] '''+''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c]
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** 1 associated gene(s):
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* With common name(s):
−
*** [[Tiso_gene_1778]]
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** 1 L-glutamate[c] '''+''' 1 a tRNAglu[c] '''+''' 1 ATP[c] '''=>''' 1 an L-glutamyl-[tRNAGlu][c] '''+''' 1 AMP[c] '''+''' 1 diphosphate[c]
−
** 2 reconstruction source(s) associated:
+
 
−
*** [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** [[orthology-esiliculosus]]
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Genes have been associated with this reaction based on different elements listed below.
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* [[IMP-DEHYDROG-RXN]]
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* Gene: [[Tiso_gene_5379]]
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** 1 associated gene(s):
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_6377]]
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*** Assignment: EC-NUMBER
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** 7 reconstruction source(s) associated:
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** Source: [[annotation-experimental_annotation]]
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*** [[annotation-experimental_annotation]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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** Source: [[orthology-esiliculosus]]
−
*** [[annotation-in-silico_annotation]]
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* Gene: [[Tiso_gene_5046]]
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*** [[orthology-athaliana]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
−
*** [[manual-primary_network]]
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** Source: [[annotation-experimental_annotation]]
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*** [[orthology-creinhardtii]]
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*** Assignment: EC-NUMBER
−
* [[INOSINE-NUCLEOSIDASE-RXN]]
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== Pathways  ==
−
** 1 associated gene(s):
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* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
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*** [[Tiso_gene_9396]]
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** '''21''' reactions found over '''21''' reactions in the full pathway
−
** 2 reconstruction source(s) associated:
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* [[PWY-5188]], tetrapyrrole biosynthesis I (from glutamate): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5188 PWY-5188]
−
*** [[annotation-in-silico_annotation]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
−
*** [[orthology-creinhardtii]]
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== Reconstruction information  ==
−
* [[RXN-7607]]
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* Category: [[orthology]]
−
** 7 associated gene(s):
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** Source: [[orthology-esiliculosus]]
−
*** [[Tiso_gene_14246]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_6988]]
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* Category: [[manual]]
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*** [[Tiso_gene_13929]]
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** Source: [[manual-primary_network]]
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*** [[Tiso_gene_5911]]
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* Category: [[annotation]]
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*** [[Tiso_gene_6640]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[Tiso_gene_14434]]
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*** Tool: [[pathwaytools]]
−
*** [[Tiso_gene_14435]]
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** Source: [[annotation-experimental_annotation]]
−
** 2 reconstruction source(s) associated:
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*** Tool: [[pathwaytools]]
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
* [[RXN-7682]]
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−
** 1 associated gene(s):
+
−
*** [[Tiso_gene_11775]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-athaliana]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
* [[RXN0-363]]
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−
** 2 associated gene(s):
+
−
*** [[Tiso_gene_11910]]
+
−
*** [[Tiso_gene_12995]]
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−
** 1 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
+
−
* [[RXN0-901]]
+
−
** 1 associated gene(s):
+
−
*** [[Tiso_gene_11775]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[orthology-athaliana]]
+
−
*** [[annotation-in-silico_annotation]]
+
−
* [[XMPXAN-RXN]]
+
−
** 7 associated gene(s):
+
−
*** [[Tiso_gene_5911]]
+
−
*** [[Tiso_gene_13929]]
+
−
*** [[Tiso_gene_14246]]
+
−
*** [[Tiso_gene_6988]]
+
−
*** [[Tiso_gene_14435]]
+
−
*** [[Tiso_gene_14434]]
+
−
*** [[Tiso_gene_6640]]
+
−
** 2 reconstruction source(s) associated:
+
−
*** [[annotation-in-silico_annotation]]
+
−
*** [[orthology-esiliculosus]]
+
−
== Reaction(s) not found ==
+
 
== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-3193}}
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* RHEA:
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{{#set: common name=adenosine nucleotides degradation I}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23540 23540]
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{{#set: common name=purine nucleotide catabolism}}
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* LIGAND-RXN:
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{{#set: reaction found=8}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05578 R05578]
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{{#set: total reaction=8}}
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* UNIPROT:
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{{#set: completion rate=100.0}}
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** [http://www.uniprot.org/uniprot/P47700 P47700]
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** [http://www.uniprot.org/uniprot/O52914 O52914]
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** [http://www.uniprot.org/uniprot/P43818 P43818]
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** [http://www.uniprot.org/uniprot/O26157 O26157]
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** [http://www.uniprot.org/uniprot/Q9ZLJ1 Q9ZLJ1]
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** [http://www.uniprot.org/uniprot/O25360 O25360]
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** [http://www.uniprot.org/uniprot/O51345 O51345]
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** [http://www.uniprot.org/uniprot/Q9Z7Z3 Q9Z7Z3]
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** [http://www.uniprot.org/uniprot/P96551 P96551]
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** [http://www.uniprot.org/uniprot/O67271 O67271]
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** [http://www.uniprot.org/uniprot/O83679 O83679]
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** [http://www.uniprot.org/uniprot/Q9ZLZ7 Q9ZLZ7]
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** [http://www.uniprot.org/uniprot/Q9PP78 Q9PP78]
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** [http://www.uniprot.org/uniprot/Q9CDZ7 Q9CDZ7]
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** [http://www.uniprot.org/uniprot/O84451 O84451]
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** [http://www.uniprot.org/uniprot/Q9X2I8 Q9X2I8]
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** [http://www.uniprot.org/uniprot/Q9JWT4 Q9JWT4]
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** [http://www.uniprot.org/uniprot/Q9ZDK3 Q9ZDK3]
 +
** [http://www.uniprot.org/uniprot/Q9X172 Q9X172]
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** [http://www.uniprot.org/uniprot/Q58772 Q58772]
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** [http://www.uniprot.org/uniprot/Q9ZCT8 Q9ZCT8]
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** [http://www.uniprot.org/uniprot/P59690 P59690]
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** [http://www.uniprot.org/uniprot/Q43768 Q43768]
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** [http://www.uniprot.org/uniprot/Q43794 Q43794]
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** [http://www.uniprot.org/uniprot/P46655 P46655]
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** [http://www.uniprot.org/uniprot/P48525 P48525]
 +
** [http://www.uniprot.org/uniprot/P75114 P75114]
 +
** [http://www.uniprot.org/uniprot/Q49061 Q49061]
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** [http://www.uniprot.org/uniprot/P22249 P22249]
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** [http://www.uniprot.org/uniprot/P22250 P22250]
 +
** [http://www.uniprot.org/uniprot/P04805 P04805]
 +
** [http://www.uniprot.org/uniprot/P07814 P07814]
 +
** [http://www.uniprot.org/uniprot/P15189 P15189]
 +
** [http://www.uniprot.org/uniprot/O65253 O65253]
 +
** [http://www.uniprot.org/uniprot/O68055 O68055]
 +
** [http://www.uniprot.org/uniprot/O68142 O68142]
 +
** [http://www.uniprot.org/uniprot/O86528 O86528]
 +
** [http://www.uniprot.org/uniprot/O13775 O13775]
 +
** [http://www.uniprot.org/uniprot/Q9ZFA3 Q9ZFA3]
 +
** [http://www.uniprot.org/uniprot/O82462 O82462]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=glutamyl-trna_synthetase}}
 +
{{#set: ec number=EC-6.1.1.17}}
 +
{{#set: gene associated=Tiso_gene_5379|Tiso_gene_5046}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY|PWY-5188}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|manual-primary_network|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:29, 21 March 2018

Reaction GLURS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • glutamyl-trna_synthetase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-glutamate[c] + 1 a tRNAglu[c] + 1 ATP[c] => 1 an L-glutamyl-[tRNAGlu][c] + 1 AMP[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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