Difference between revisions of "Lichenin"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-4144 RXN-4144] == * direction: ** LEFT-TO-RIGHT * common name: ** 4α-methyl-5α-ergo...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6480 RXN0-6480] == * direction: ** LEFT-TO-RIGHT * common name: ** oxidoreductase ** ORF * ec...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-4144 RXN-4144] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6480 RXN0-6480] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 4α-methyl-5α-ergosta-8,14,24(28)-trien-3β-ol Δ14 reductase
+
** oxidoreductase
 +
** ORF
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.3.1.70 EC-1.3.1.70]
+
** [http://enzyme.expasy.org/EC/3.1.26.5 EC-3.1.26.5]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[ALPHA-METHYL-5-ALPHA-ERGOSTA]][c] '''=>''' 1 [[NADP]][c] '''+''' 1 [[CPD-4081]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[CPD0-2354]][c] '''=>''' 1 [[tRNA-fragment]][c] '''+''' 1 [[tRNAs]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NADPH[c] '''+''' 1 H+[c] '''+''' 1 4α-methyl-5α-ergosta-8,14,24(28)-trien-3β-ol[c] '''=>''' 1 NADP+[c] '''+''' 1 4α-methyl-5α-ergosta-8,24-dien-3β-ol[c]
+
** 1 H2O[c] '''+''' 1 a tRNA precursor with a 5' extension[c] '''=>''' 1 a tRNA fragment[c] '''+''' 1 an uncharged tRNA[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10982]]
+
* Gene: [[Tiso_gene_14344]]
−
** [[pantograph]]-[[athaliana]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_10971]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_10972]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_3898]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14345]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-2541]], plant sterol biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2541 PWY-2541]
+
* [[PWY0-1479]], tRNA processing: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1479 PWY0-1479]
−
** '''10''' reactions found over '''36''' reactions in the full pathway
+
** '''4''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R07483 R07483]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=4α-methyl-5α-ergosta-8,14,24(28)-trien-3β-ol Δ14 reductase}}
+
{{#set: common name=oxidoreductase}}
−
{{#set: ec number=EC-1.3.1.70}}
+
{{#set: common name=ORF}}
−
{{#set: gene associated=Tiso_gene_10982}}
+
{{#set: ec number=EC-3.1.26.5}}
−
{{#set: in pathway=PWY-2541}}
+
{{#set: gene associated=Tiso_gene_14344|Tiso_gene_10971|Tiso_gene_10972|Tiso_gene_3898|Tiso_gene_14345}}
−
{{#set: reconstruction category=orthology}}
+
{{#set: in pathway=PWY0-1479}}
−
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction tool=pantograph}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:29, 21 March 2018

Reaction RXN0-6480

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • oxidoreductase
    • ORF
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 a tRNA precursor with a 5' extension[c] => 1 a tRNA fragment[c] + 1 an uncharged tRNA[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1479, tRNA processing: PWY0-1479
    • 4 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Lichenin&oldid=34417"