Difference between revisions of "RXN0-5063"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FERREDOXIN--NITRITE-REDUCTASE-RXN FERREDOXIN--NITRITE-REDUCTASE-RXN] == * direction: ** LEFT-TO-RIG...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CAFFEOYL-COA CAFFEOYL-COA] == * smiles: ** CC(C)(C(O)C(=O)NCCC(=O)NCCSC(=O)C=CC1(=CC=C(O)C(=C1)...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FERREDOXIN--NITRITE-REDUCTASE-RXN FERREDOXIN--NITRITE-REDUCTASE-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CAFFEOYL-COA CAFFEOYL-COA] ==
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* direction:
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* smiles:
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** LEFT-TO-RIGHT
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** CC(C)(C(O)C(=O)NCCC(=O)NCCSC(=O)C=CC1(=CC=C(O)C(=C1)O))COP(=O)(OP(=O)(OCC2(C(OP([O-])(=O)[O-])C(O)C(O2)N4(C3(=C(C(N)=NC=N3)N=C4))))[O-])[O-]
 
* common name:
 
* common name:
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** nitrite_reductase
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** trans-caffeoyl-CoA
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/1.7.7.1 EC-1.7.7.1]
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** InChIKey=QHRGJMIMHCLHRG-ZSELIEHESA-J
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* molecular weight:
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** 925.647   
 
* Synonym(s):
 
* Synonym(s):
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** 3,4-dihydroxyacryloyl-CoA
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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* [[CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN]]
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** 6 [[Reduced-ferredoxins]][c] '''+''' 8 [[PROTON]][c] '''+''' 1 [[NITRITE]][c] '''=>''' 6 [[Oxidized-ferredoxins]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 2 [[WATER]][c]
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== Reaction(s) known to produce the compound ==
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* With common name(s):
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* [[RXN-1126]]
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** 6 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 8 H+[c] '''+''' 1 nitrite[c] '''=>''' 6 an oxidized ferredoxin [iron-sulfur] cluster[c] '''+''' 1 ammonium[c] '''+''' 2 H2O[c]
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== Reaction(s) of unknown directionality ==
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_7919]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-381]], nitrate reduction II (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY-381 PWY-381]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY490-3]], nitrate reduction VI (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY490-3 PWY490-3]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* LIGAND-RXN:
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* PUBCHEM:
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** [http://www.genome.jp/dbget-bin/www_bget?R00790 R00790]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=45266599 45266599]
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{{#set: direction=LEFT-TO-RIGHT}}
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* CHEBI:
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{{#set: common name=nitrite_reductase}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=57372 57372]
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{{#set: ec number=EC-1.7.7.1}}
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* LIGAND-CPD:
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{{#set: gene associated=Tiso_gene_7919}}
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** [http://www.genome.jp/dbget-bin/www_bget?C00323 C00323]
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{{#set: in pathway=PWY-381|PWY490-3}}
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{{#set: smiles=CC(C)(C(O)C(=O)NCCC(=O)NCCSC(=O)C=CC1(=CC=C(O)C(=C1)O))COP(=O)(OP(=O)(OCC2(C(OP([O-])(=O)[O-])C(O)C(O2)N4(C3(=C(C(N)=NC=N3)N=C4))))[O-])[O-]}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: common name=trans-caffeoyl-CoA}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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{{#set: inchi key=InChIKey=QHRGJMIMHCLHRG-ZSELIEHESA-J}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: molecular weight=925.647    }}
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{{#set: common name=3,4-dihydroxyacryloyl-CoA}}
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{{#set: consumed by=CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN}}
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{{#set: produced by=RXN-1126}}

Revision as of 15:30, 21 March 2018

Metabolite CAFFEOYL-COA

  • smiles:
    • CC(C)(C(O)C(=O)NCCC(=O)NCCSC(=O)C=CC1(=CC=C(O)C(=C1)O))COP(=O)(OP(=O)(OCC2(C(OP([O-])(=O)[O-])C(O)C(O2)N4(C3(=C(C(N)=NC=N3)N=C4))))[O-])[O-]
  • common name:
    • trans-caffeoyl-CoA
  • inchi key:
    • InChIKey=QHRGJMIMHCLHRG-ZSELIEHESA-J
  • molecular weight:
    • 925.647
  • Synonym(s):
    • 3,4-dihydroxyacryloyl-CoA

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CC(C)(C(O)C(=O)NCCC(=O)NCCSC(=O)C=CC1(=CC=C(O)C(=C1)O))COP(=O)(OP(=O)(OCC2(C(OP([O-])(=O)[O-])C(O)C(O2)N4(C3(=C(C(N)=NC=N3)N=C4))))[O-])[O-" cannot be used as a page name in this wiki.




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