Difference between revisions of "CPD0-341"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] == * direction: ** REVERSIBLE * common name: ** dna_topoisomerase ** dna...")
(Created page with "Category:Gene == Gene Tiso_gene_3811 == * right end position: ** 8382 * transcription direction: ** POSITIVE * left end position: ** 6519 * centisome position: ** 40.74884...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] ==
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== Gene Tiso_gene_3811 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 8382
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* common name:
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* transcription direction:
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** dna_topoisomerase
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** POSITIVE
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** dna_topoisomerase1
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* left end position:
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* ec number:
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** 6519
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** [http://enzyme.expasy.org/EC/5.99.1.2 EC-5.99.1.2]
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* centisome position:
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** 40.748844   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[MEVALONATE-KINASE-RXN]]
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** 1 [[Negatively-super-coiled-DNAs]][c] '''<=>''' 1 [[Relaxed-DNAs]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 a negatively supercoiled DNA[c] '''<=>''' 1 a relaxed DNA[c]
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** Source: [[orthology-athaliana]]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_5035]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_5747]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_1739]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_3425]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_1740]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14333]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_5036]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_200]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_10513]]
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_1291]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_5748]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_5749]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_6569]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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== Pathways  ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== Pathways associated ==
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* Category: [[annotation]]
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* [[PWY-922]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-6174]]
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*** Tool: [[pathwaytools]]
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* [[PWY-7391]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* UNIPROT:
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{{#set: right end position=8382}}
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** [http://www.uniprot.org/uniprot/Q7M0H8 Q7M0H8]
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{{#set: transcription direction=POSITIVE}}
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** [http://www.uniprot.org/uniprot/Q07050 Q07050]
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{{#set: left end position=6519}}
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** [http://www.uniprot.org/uniprot/Q9JWZ5 Q9JWZ5]
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{{#set: centisome position=40.748844    }}
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** [http://www.uniprot.org/uniprot/Q59046 Q59046]
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{{#set: reaction associated=MEVALONATE-KINASE-RXN}}
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** [http://www.uniprot.org/uniprot/Q9PLZ2 Q9PLZ2]
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{{#set: pathway associated=PWY-922|PWY-6174|PWY-7391}}
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** [http://www.uniprot.org/uniprot/P47368 P47368]
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** [http://www.uniprot.org/uniprot/Q9CG80 Q9CG80]
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** [http://www.uniprot.org/uniprot/P43704 P43704]
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** [http://www.uniprot.org/uniprot/P43012 P43012]
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** [http://www.uniprot.org/uniprot/P0A620 P0A620]
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** [http://www.uniprot.org/uniprot/P04786 P04786]
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** [http://www.uniprot.org/uniprot/P13099 P13099]
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** [http://www.uniprot.org/uniprot/P06612 P06612]
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** [http://www.uniprot.org/uniprot/P11387 P11387]
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** [http://www.uniprot.org/uniprot/P07799 P07799]
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** [http://www.uniprot.org/uniprot/P93119 P93119]
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** [http://www.uniprot.org/uniprot/O13463 O13463]
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** [http://www.uniprot.org/uniprot/Q94705 Q94705]
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** [http://www.uniprot.org/uniprot/Q04750 Q04750]
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** [http://www.uniprot.org/uniprot/P14294 P14294]
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** [http://www.uniprot.org/uniprot/P30181 P30181]
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** [http://www.uniprot.org/uniprot/P34185 P34185]
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** [http://www.uniprot.org/uniprot/P30189 P30189]
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** [http://www.uniprot.org/uniprot/P40114 P40114]
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** [http://www.uniprot.org/uniprot/P41511 P41511]
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** [http://www.uniprot.org/uniprot/Q8I3Z9 Q8I3Z9]
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** [http://www.uniprot.org/uniprot/Q26024 Q26024]
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** [http://www.uniprot.org/uniprot/Q27529 Q27529]
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** [http://www.uniprot.org/uniprot/P41512 P41512]
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** [http://www.uniprot.org/uniprot/O24307 O24307]
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** [http://www.uniprot.org/uniprot/P71196 P71196]
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** [http://www.uniprot.org/uniprot/O70157 O70157]
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** [http://www.uniprot.org/uniprot/O60126 O60126]
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** [http://www.uniprot.org/uniprot/O61660 O61660]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=dna_topoisomerase}}
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{{#set: common name=dna_topoisomerase1}}
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{{#set: ec number=EC-5.99.1.2}}
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{{#set: gene associated=Tiso_gene_5035|Tiso_gene_5747|Tiso_gene_1739|Tiso_gene_3425|Tiso_gene_1740|Tiso_gene_14333|Tiso_gene_5036|Tiso_gene_200|Tiso_gene_10513|Tiso_gene_1291|Tiso_gene_5748|Tiso_gene_5749|Tiso_gene_6569}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:30, 21 March 2018

Gene Tiso_gene_3811

  • right end position:
    • 8382
  • transcription direction:
    • POSITIVE
  • left end position:
    • 6519
  • centisome position:
    • 40.748844
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CPD0-341&oldid=34538"