Difference between revisions of "5.99.1.2-RXN"

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(Created page with "Category:Pathway == Pathway [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY] == * taxonomic range: ** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-12...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=FERREDOXIN--NITRITE-REDUCTASE-RXN FERREDOXIN--NITRITE-REDUCTASE-RXN] == * direction: ** LEFT-TO-RIG...")
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[[Category:Pathway]]
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[[Category:Reaction]]
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== Pathway [http://metacyc.org/META/NEW-IMAGE?object=P162-PWY P162-PWY] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=FERREDOXIN--NITRITE-REDUCTASE-RXN FERREDOXIN--NITRITE-REDUCTASE-RXN] ==
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* taxonomic range:
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* direction:
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-1239 TAX-1239]
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** LEFT-TO-RIGHT
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** [http://metacyc.org/META/NEW-IMAGE?object=TAX-32066 TAX-32066]
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* common name:
 
* common name:
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** L-glutamate degradation V (via hydroxyglutarate)
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** nitrite_reductase
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* ec number:
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** [http://enzyme.expasy.org/EC/1.7.7.1 EC-1.7.7.1]
 
* Synonym(s):
 
* Synonym(s):
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** L-glutamate fermentation
 
  
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== Reaction(s) found ==
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== Reaction Formula ==
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'''4''' reactions found over '''11''' reactions in the full pathway
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* With identifiers:
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* [[ACETYL-COA-ACETYLTRANSFER-RXN]]
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** 8 [[PROTON]][c] '''+''' 6 [[Reduced-ferredoxins]][c] '''+''' 1 [[NITRITE]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 2 [[WATER]][c] '''+''' 6 [[Oxidized-ferredoxins]][c]
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** 3 associated gene(s):
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* With common name(s):
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*** [[Tiso_gene_16181]]
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** 8 H+[c] '''+''' 6 a reduced ferredoxin [iron-sulfur] cluster[c] '''+''' 1 nitrite[c] '''=>''' 1 ammonium[c] '''+''' 2 H2O[c] '''+''' 6 an oxidized ferredoxin [iron-sulfur] cluster[c]
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*** [[Tiso_gene_15327]]
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*** [[Tiso_gene_17451]]
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== Genes associated with this reaction  ==
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** 4 reconstruction source(s) associated:
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Genes have been associated with this reaction based on different elements listed below.
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*** [[orthology-athaliana]]
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* Gene: [[Tiso_gene_7919]]
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*** [[orthology-creinhardtii]]
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** Source: [[annotation-in-silico_annotation]]
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*** [[orthology-synechocystis]]
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*** Assignment: EC-NUMBER
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*** [[orthology-esiliculosus]]
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** Source: [[annotation-experimental_annotation]]
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* [[GLUTAMATE-DEHYDROGENASE-RXN]]
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*** Assignment: EC-NUMBER
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** 1 associated gene(s):
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_2337]]
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** Source: [[orthology-athaliana]]
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** 2 reconstruction source(s) associated:
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** Source: [[orthology-synechocystis]]
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*** [[annotation-in-silico_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-esiliculosus]]
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== Pathways  ==
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* [[RXN-11662]]
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* [[PWY-381]], nitrate reduction II (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY-381 PWY-381]
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** 7 associated gene(s):
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** '''3''' reactions found over '''3''' reactions in the full pathway
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*** [[Tiso_gene_5857]]
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* [[PWY490-3]], nitrate reduction VI (assimilatory): [http://metacyc.org/META/NEW-IMAGE?object=PWY490-3 PWY490-3]
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*** [[Tiso_gene_16703]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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*** [[Tiso_gene_14027]]
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== Reconstruction information  ==
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*** [[Tiso_gene_14262]]
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* Category: [[orthology]]
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*** [[Tiso_gene_14026]]
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** Source: [[orthology-athaliana]]
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*** [[Tiso_gene_18838]]
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*** Tool: [[pantograph]]
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*** [[Tiso_gene_18839]]
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** Source: [[orthology-synechocystis]]
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** 5 reconstruction source(s) associated:
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*** Tool: [[pantograph]]
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*** [[annotation-experimental_annotation]]
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** Source: [[orthology-esiliculosus]]
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*** [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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*** [[annotation-in-silico_annotation]]
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* Category: [[manual]]
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*** [[orthology-creinhardtii]]
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** Source: [[manual-primary_network]]
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*** [[orthology-esiliculosus]]
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* Category: [[annotation]]
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* [[RXN-11667]]
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** Source: [[annotation-in-silico_annotation]]
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** 1 associated gene(s):
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*** Tool: [[pathwaytools]]
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*** [[Tiso_gene_5857]]
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** Source: [[annotation-experimental_annotation]]
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** 1 reconstruction source(s) associated:
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*** Tool: [[pathwaytools]]
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*** [[orthology-athaliana]]
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== Reaction(s) not found ==
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* [http://metacyc.org/META/NEW-IMAGE?object=ACETATE--COA-LIGASE-ADP-FORMING-RXN ACETATE--COA-LIGASE-ADP-FORMING-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=BUTYRYL-COA-DEHYDROGENASE-RXN BUTYRYL-COA-DEHYDROGENASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=GLUTACONYL-COA-DECARBOXYLASE-RXN GLUTACONYL-COA-DECARBOXYLASE-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=KETOGLUTREDUCT-RXN KETOGLUTREDUCT-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=R11-RXN R11-RXN]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1082 RXN-1082]
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* [http://metacyc.org/META/NEW-IMAGE?object=RXN-1083 RXN-1083]
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== External links  ==
 
== External links  ==
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{{#set: taxonomic range=TAX-1239}}
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* LIGAND-RXN:
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{{#set: taxonomic range=TAX-32066}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00790 R00790]
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{{#set: common name=L-glutamate degradation V (via hydroxyglutarate)}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=L-glutamate fermentation}}
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{{#set: common name=nitrite_reductase}}
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{{#set: reaction found=4}}
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{{#set: ec number=EC-1.7.7.1}}
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{{#set: total reaction=11}}
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{{#set: gene associated=Tiso_gene_7919}}
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{{#set: completion rate=36.0}}
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{{#set: in pathway=PWY-381|PWY490-3}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:30, 21 March 2018

Reaction FERREDOXIN--NITRITE-REDUCTASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • nitrite_reductase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-381, nitrate reduction II (assimilatory): PWY-381
    • 3 reactions found over 3 reactions in the full pathway
  • PWY490-3, nitrate reduction VI (assimilatory): PWY490-3
    • 3 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





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