Difference between revisions of "Tiso gene 12634"

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(Created page with "Category:Gene == Gene Tiso_gene_4020 == * left end position: ** 9202 * transcription direction: ** NEGATIVE * right end position: ** 10646 * centisome position: ** 59.0894...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] == * direction: ** REVERSIBLE * common name: ** dna_topoisomerase ** dna...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_4020 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5.99.1.2-RXN 5.99.1.2-RXN] ==
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* left end position:
+
* direction:
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** 9202
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** REVERSIBLE
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* transcription direction:
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* common name:
−
** NEGATIVE
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** dna_topoisomerase
−
* right end position:
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** dna_topoisomerase1
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** 10646
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* ec number:
−
* centisome position:
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** [http://enzyme.expasy.org/EC/5.99.1.2 EC-5.99.1.2]
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** 59.08945   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[RXN-11839]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[Negatively-super-coiled-DNAs]][c] '''<=>''' 1 [[Relaxed-DNAs]][c]
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***automated-name-match
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* With common name(s):
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* [[RXN-11840]]
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** 1 a negatively supercoiled DNA[c] '''<=>''' 1 a relaxed DNA[c]
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** in-silico_annotation
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−
***automated-name-match
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== Genes associated with this reaction  ==
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* [[RXN-11841]]
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Genes have been associated with this reaction based on different elements listed below.
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** in-silico_annotation
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* Gene: [[Tiso_gene_14333]]
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***automated-name-match
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** Source: [[annotation-in-silico_annotation]]
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* [[RXN-11842]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** in-silico_annotation
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* Gene: [[Tiso_gene_5748]]
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***automated-name-match
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** Source: [[annotation-in-silico_annotation]]
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* [[TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** in-silico_annotation
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* Gene: [[Tiso_gene_5747]]
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***ec-number
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** Source: [[annotation-in-silico_annotation]]
−
== Pathways associated ==
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*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_5036]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_5749]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_6569]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_200]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_10513]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1740]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_5035]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_1739]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_3425]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_1291]]
 +
** Source: [[orthology-esiliculosus]]
 +
== Pathways ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=9202}}
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* UNIPROT:
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{{#set: transcription direction=NEGATIVE}}
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** [http://www.uniprot.org/uniprot/Q7M0H8 Q7M0H8]
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{{#set: right end position=10646}}
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** [http://www.uniprot.org/uniprot/Q07050 Q07050]
−
{{#set: centisome position=59.08945    }}
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** [http://www.uniprot.org/uniprot/Q9JWZ5 Q9JWZ5]
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{{#set: reaction associated=RXN-11839|RXN-11840|RXN-11841|RXN-11842|TRNA-PSEUDOURIDINE-SYNTHASE-I-RXN}}
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** [http://www.uniprot.org/uniprot/Q59046 Q59046]
 +
** [http://www.uniprot.org/uniprot/Q9PLZ2 Q9PLZ2]
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** [http://www.uniprot.org/uniprot/P47368 P47368]
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** [http://www.uniprot.org/uniprot/Q9CG80 Q9CG80]
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** [http://www.uniprot.org/uniprot/P43704 P43704]
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** [http://www.uniprot.org/uniprot/P43012 P43012]
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** [http://www.uniprot.org/uniprot/P0A620 P0A620]
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** [http://www.uniprot.org/uniprot/P04786 P04786]
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** [http://www.uniprot.org/uniprot/P13099 P13099]
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** [http://www.uniprot.org/uniprot/P06612 P06612]
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** [http://www.uniprot.org/uniprot/P11387 P11387]
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** [http://www.uniprot.org/uniprot/P07799 P07799]
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** [http://www.uniprot.org/uniprot/P93119 P93119]
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** [http://www.uniprot.org/uniprot/O13463 O13463]
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** [http://www.uniprot.org/uniprot/Q94705 Q94705]
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** [http://www.uniprot.org/uniprot/Q04750 Q04750]
 +
** [http://www.uniprot.org/uniprot/P14294 P14294]
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** [http://www.uniprot.org/uniprot/P30181 P30181]
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** [http://www.uniprot.org/uniprot/P34185 P34185]
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** [http://www.uniprot.org/uniprot/P30189 P30189]
 +
** [http://www.uniprot.org/uniprot/P40114 P40114]
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** [http://www.uniprot.org/uniprot/P41511 P41511]
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** [http://www.uniprot.org/uniprot/Q8I3Z9 Q8I3Z9]
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** [http://www.uniprot.org/uniprot/Q26024 Q26024]
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** [http://www.uniprot.org/uniprot/Q27529 Q27529]
 +
** [http://www.uniprot.org/uniprot/P41512 P41512]
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** [http://www.uniprot.org/uniprot/O24307 O24307]
 +
** [http://www.uniprot.org/uniprot/P71196 P71196]
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** [http://www.uniprot.org/uniprot/O70157 O70157]
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** [http://www.uniprot.org/uniprot/O60126 O60126]
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** [http://www.uniprot.org/uniprot/O61660 O61660]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: common name=dna_topoisomerase}}
 +
{{#set: common name=dna_topoisomerase1}}
 +
{{#set: ec number=EC-5.99.1.2}}
 +
{{#set: gene associated=Tiso_gene_14333|Tiso_gene_5748|Tiso_gene_5747|Tiso_gene_5036|Tiso_gene_5749|Tiso_gene_6569|Tiso_gene_200|Tiso_gene_10513|Tiso_gene_1740|Tiso_gene_5035|Tiso_gene_1739|Tiso_gene_3425|Tiso_gene_1291}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:31, 21 March 2018

Reaction 5.99.1.2-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • dna_topoisomerase
    • dna_topoisomerase1
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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