Difference between revisions of "LINOLEIC ACID"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=5-NUCLEOTID-RXN 5-NUCLEOTID-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_-nucleotidase...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13037 RXN-13037] == * direction: ** LEFT-TO-RIGHT * common name: ** octanoyl:GcvH transferase *...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=5-NUCLEOTID-RXN 5-NUCLEOTID-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13037 RXN-13037] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** 5_-nucleotidase
+
** octanoyl:GcvH transferase
−
** 5_deoxy_cytosolic_type_c_protein
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** lipoate-protein_ligase
−
** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
+
−
** ORF
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
+
** [http://enzyme.expasy.org/EC/2.3.1.181 EC-2.3.1.181]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Ribonucleoside-Monophosphates]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Ribonucleosides]][c] '''+''' 1 [[Pi]][c]
+
** 1 [[Gcv-H]][c] '''+''' 1 [[Octanoyl-ACPs]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[Octanoylated-Gcv-H]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a ribonucleoside 5'-monophosphate[c] '''+''' 1 H2O[c] '''=>''' 1 a ribonucleoside[c] '''+''' 1 phosphate[c]
+
** 1 [glycine cleavage system lipoyl-carrier protein]-L-lysine[c] '''+''' 1 an octanoyl-[acp][c] '''=>''' 1 H+[c] '''+''' 1 a holo-[acyl-carrier protein][c] '''+''' 1 a [glycine-cleavage complex H protein] N6-octanoyl-L-lysine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6988]]
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* Gene: [[Tiso_gene_4494]]
−
** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
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* Gene: [[Tiso_gene_4493]]
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* [[Tiso_gene_13929]]
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** Source: [[annotation-in-silico_annotation]]
−
** IN-SILICO_ANNOTATION
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*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_5911]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_14246]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14434]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6640]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_14435]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-6987]], lipoate biosynthesis and incorporation III (Bacillus): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6987 PWY-6987]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7382]], lipoate biosynthesis and incorporation (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7382 PWY-7382]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R07297 R07297]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P06196 P06196]
 
−
** [http://www.uniprot.org/uniprot/P21588 P21588]
 
−
** [http://www.uniprot.org/uniprot/O34313 O34313]
 
−
** [http://www.uniprot.org/uniprot/Q9KM44 Q9KM44]
 
−
** [http://www.uniprot.org/uniprot/O29385 O29385]
 
−
** [http://www.uniprot.org/uniprot/P44569 P44569]
 
−
** [http://www.uniprot.org/uniprot/O83142 O83142]
 
−
** [http://www.uniprot.org/uniprot/P49902 P49902]
 
−
** [http://www.uniprot.org/uniprot/P22848 P22848]
 
−
** [http://www.uniprot.org/uniprot/Q05927 Q05927]
 
−
** [http://www.uniprot.org/uniprot/P21589 P21589]
 
−
** [http://www.uniprot.org/uniprot/P29240 P29240]
 
−
** [http://www.uniprot.org/uniprot/P07024 P07024]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=5_-nucleotidase}}
+
{{#set: common name=octanoyl:GcvH transferase}}
−
{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
+
{{#set: common name=lipoate-protein_ligase}}
−
{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
+
{{#set: ec number=EC-2.3.1.181}}
−
{{#set: common name=ORF}}
+
{{#set: gene associated=Tiso_gene_4494|Tiso_gene_4493}}
−
{{#set: ec number=EC-3.1.3.5}}
+
{{#set: in pathway=PWY-6987|PWY-7382}}
−
{{#set: gene associated=Tiso_gene_6988|Tiso_gene_13929|Tiso_gene_5911|Tiso_gene_14246|Tiso_gene_14434|Tiso_gene_6640|Tiso_gene_14435}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: in pathway=}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 15:31, 21 March 2018

Reaction RXN-13037

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • octanoyl:GcvH transferase
    • lipoate-protein_ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 [glycine cleavage system lipoyl-carrier protein]-L-lysine[c] + 1 an octanoyl-[acp][c] => 1 H+[c] + 1 a holo-[acyl-carrier protein][c] + 1 a [glycine-cleavage complex H protein] N6-octanoyl-L-lysine[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6987, lipoate biosynthesis and incorporation III (Bacillus): PWY-6987
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7382, lipoate biosynthesis and incorporation (yeast): PWY-7382
    • 4 reactions found over 7 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=LINOLEIC_ACID&oldid=34609"