Difference between revisions of "Tiso gene 20543"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** (3R)-3-hydroxybutanoy...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/1.4.4...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=4.2.1.58-RXN 4.2.1.58-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GCVP-RXN GCVP-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* common name:
+
−
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase
+
−
** polyketide_synthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/1.4.4.2 EC-1.4.4.2]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
+
 
* Synonym(s):
 
* Synonym(s):
−
** crotonoyl-[acyl-carrier-protein] hydratase
 
−
** β-hydroxybutyryl acyl carrier protein (ACP) dehydrase
 
−
** β-hydroxybutyryl acyl carrier protein dehydrase
 
−
** enoyl acyl carrier protein hydrase
 
−
** crotonyl acyl carrier protein hydratase
 
−
** 3-hydroxybutyryl acyl carrier protein dehydratase
 
−
** β-hydroxybutyryl acyl carrier  protein dehydrase
 
−
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)
 
−
** (3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase
 
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Beta-3-hydroxybutyryl-ACPs]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[Crotonyl-ACPs]][c]
+
** 1 [[PROTEIN-LIPOYLLYSINE]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[GLY]][c] '''<=>''' 1 [[AMINOMETHYLDIHYDROLIPOYL-GCVH]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a (3R)-3-hydroxybutanoyl-[acp][c] '''=>''' 1 H2O[c] '''+''' 1 a crotonyl-[acp][c]
+
** 1 a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine[c] '''+''' 1 H+[c] '''+''' 1 glycine[c] '''<=>''' 1 a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_135]]
+
* Gene: [[Tiso_gene_17287]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_428]]
−
* [[Tiso_gene_13394]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_6884]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_136]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10876]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_500]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
+
* [[GLYCINE-SYN2-PWY]], glycine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=GLYCINE-SYN2-PWY GLYCINE-SYN2-PWY]
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
* [[GLYCLEAV-PWY]], glycine cleavage: [http://metacyc.org/META/NEW-IMAGE?object=GLYCLEAV-PWY GLYCLEAV-PWY]
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7388 PWY-7388]
+
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[manual]]
 
* Category: [[manual]]
 
** Source: [[manual-primary_network]]
 
** Source: [[manual-primary_network]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R04428 R04428]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03425 R03425]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* UNIPROT:
−
{{#set: common name=(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydratase}}
+
** [http://www.uniprot.org/uniprot/P26969 P26969]
−
{{#set: common name=polyketide_synthase}}
+
** [http://www.uniprot.org/uniprot/Q9UXT1 Q9UXT1]
−
{{#set: ec number=EC-2.3.1.86}}
+
** [http://www.uniprot.org/uniprot/Q9JT86 Q9JT86]
−
{{#set: ec number=EC-2.3.1.85}}
+
** [http://www.uniprot.org/uniprot/Q9UXT0 Q9UXT0]
−
{{#set: ec number=EC-4.2.1.59}}
+
** [http://www.uniprot.org/uniprot/P23378 P23378]
−
{{#set: common name=crotonoyl-[acyl-carrier-protein] hydratase|&beta;-hydroxybutyryl acyl carrier protein (ACP) dehydrase|&beta;-hydroxybutyryl acyl carrier protein dehydrase|enoyl acyl carrier protein hydrase|crotonyl acyl carrier protein hydratase|3-hydroxybutyryl acyl carrier protein dehydratase|&beta;-hydroxybutyryl acyl carrier  protein dehydrase|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase (but-2-enoyl-[acyl-carrier protein]-forming)|(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase}}
+
** [http://www.uniprot.org/uniprot/P33195 P33195]
−
{{#set: gene associated=Tiso_gene_135|Tiso_gene_13394|Tiso_gene_6884|Tiso_gene_136|Tiso_gene_10876|Tiso_gene_500}}
+
** [http://www.uniprot.org/uniprot/O80988 O80988]
−
{{#set: in pathway=PWY-5971|PWY-5994|PWY-7388}}
+
** [http://www.uniprot.org/uniprot/Q94B78 Q94B78]
−
{{#set: reconstruction category=manual|annotation}}
+
** [http://www.uniprot.org/uniprot/O32915 O32915]
−
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
+
** [http://www.uniprot.org/uniprot/O22575 O22575]
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-1.4.4.2}}
 +
{{#set: gene associated=Tiso_gene_17287|Tiso_gene_428}}
 +
{{#set: in pathway=GLYCINE-SYN2-PWY|GLYCLEAV-PWY}}
 +
{{#set: reconstruction category=orthology|manual}}
 +
{{#set: reconstruction source=manual-primary_network|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 15:32, 21 March 2018

Reaction GCVP-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




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