Difference between revisions of "Saturated-Fatty-Acyl-ACPs"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_11612 == * left end position: ** 47 * transcription direction: ** POSITIVE * right end position: ** 2180 * centisome position: ** 0.6122981...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=S-ADENMETSYN-RXN S-ADENMETSYN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** S-adenosylmet...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_11612 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=S-ADENMETSYN-RXN S-ADENMETSYN-RXN] ==
−
* left end position:
+
* direction:
−
** 47
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** S-adenosylmethionine synthase 1
−
* right end position:
+
* ec number:
−
** 2180
+
** [http://enzyme.expasy.org/EC/2.5.1.6 EC-2.5.1.6]
−
* centisome position:
+
−
** 0.6122981   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[3.1.13.1-RXN]]
+
* With identifiers:
−
** in-silico_annotation
+
** 1 [[MET]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[PPI]][c]
−
***ec-number
+
* With common name(s):
−
* [[RXN0-4222]]
+
** 1 L-methionine[c] '''+''' 1 ATP[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 S-adenosyl-L-methionine[c] '''+''' 1 diphosphate[c]
−
** in-silico_annotation
+
 
−
***ec-number
+
== Genes associated with this reaction  ==
−
* [[RXN0-6479]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** in-silico_annotation
+
* Gene: [[Tiso_gene_13443]]
−
***ec-number
+
** Source: [[annotation-experimental_annotation]]
−
* [[RXN0-6524]]
+
*** Assignment: EC-NUMBER
−
** in-silico_annotation
+
** Source: [[orthology-athaliana]]
−
***ec-number
+
** Source: [[orthology-synechocystis]]
−
* [[RXN0-6525]]
+
** Source: [[orthology-esiliculosus]]
−
** in-silico_annotation
+
** Source: [[orthology-creinhardtii]]
−
***ec-number
+
== Pathways  ==
−
== Pathways associated ==
+
* [[SAM-PWY]], S-adenosyl-L-methionine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SAM-PWY SAM-PWY]
−
* [[PWY0-1479]]
+
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[METHIONINE-DEG1-PWY]], L-methionine degradation I (to L-homocysteine): [http://metacyc.org/META/NEW-IMAGE?object=METHIONINE-DEG1-PWY METHIONINE-DEG1-PWY]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[ETHYL-PWY]], ethylene biosynthesis I (plants): [http://metacyc.org/META/NEW-IMAGE?object=ETHYL-PWY ETHYL-PWY]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5912]], 2'-deoxymugineic acid phytosiderophore biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5912 PWY-5912]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5041]], S-adenosyl-L-methionine cycle II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5041 PWY-5041]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=47}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21080 21080]
−
{{#set: right end position=2180}}
+
* LIGAND-RXN:
−
{{#set: centisome position=0.6122981    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00177 R00177]
−
{{#set: reaction associated=3.1.13.1-RXN|RXN0-4222|RXN0-6479|RXN0-6524|RXN0-6525}}
+
* UNIPROT:
−
{{#set: pathway associated=PWY0-1479}}
+
** [http://www.uniprot.org/uniprot/P19358 P19358]
 +
** [http://www.uniprot.org/uniprot/P18298 P18298]
 +
** [http://www.uniprot.org/uniprot/Q91X83 Q91X83]
 +
** [http://www.uniprot.org/uniprot/Q9PNJ8 Q9PNJ8]
 +
** [http://www.uniprot.org/uniprot/P54419 P54419]
 +
** [http://www.uniprot.org/uniprot/P56460 P56460]
 +
** [http://www.uniprot.org/uniprot/Q9JVV6 Q9JVV6]
 +
** [http://www.uniprot.org/uniprot/Q9CEE0 Q9CEE0]
 +
** [http://www.uniprot.org/uniprot/O50163 O50163]
 +
** [http://www.uniprot.org/uniprot/P43762 P43762]
 +
** [http://www.uniprot.org/uniprot/P23686 P23686]
 +
** [http://www.uniprot.org/uniprot/P17562 P17562]
 +
** [http://www.uniprot.org/uniprot/Q7M4Y8 Q7M4Y8]
 +
** [http://www.uniprot.org/uniprot/Q9S992 Q9S992]
 +
** [http://www.uniprot.org/uniprot/Q90862 Q90862]
 +
** [http://www.uniprot.org/uniprot/P13444 P13444]
 +
** [http://www.uniprot.org/uniprot/P31153 P31153]
 +
** [http://www.uniprot.org/uniprot/Q00266 Q00266]
 +
** [http://www.uniprot.org/uniprot/P43281 P43281]
 +
** [http://www.uniprot.org/uniprot/P40320 P40320]
 +
** [http://www.uniprot.org/uniprot/P43280 P43280]
 +
** [http://www.uniprot.org/uniprot/P43282 P43282]
 +
** [http://www.uniprot.org/uniprot/P48498 P48498]
 +
** [http://www.uniprot.org/uniprot/P10659 P10659]
 +
** [http://www.uniprot.org/uniprot/Q39465 Q39465]
 +
** [http://www.uniprot.org/uniprot/P48466 P48466]
 +
** [http://www.uniprot.org/uniprot/P49612 P49612]
 +
** [http://www.uniprot.org/uniprot/P49613 P49613]
 +
** [http://www.uniprot.org/uniprot/P78003 P78003]
 +
** [http://www.uniprot.org/uniprot/Q49070 Q49070]
 +
** [http://www.uniprot.org/uniprot/P0A817 P0A817]
 +
** [http://www.uniprot.org/uniprot/P50299 P50299]
 +
** [http://www.uniprot.org/uniprot/O22350 O22350]
 +
** [http://www.uniprot.org/uniprot/P24260 P24260]
 +
** [http://www.uniprot.org/uniprot/O60198 O60198]
 +
** [http://www.uniprot.org/uniprot/Q12642 Q12642]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=S-adenosylmethionine synthase 1}}
 +
{{#set: ec number=EC-2.5.1.6}}
 +
{{#set: gene associated=Tiso_gene_13443}}
 +
{{#set: in pathway=SAM-PWY|METHIONINE-DEG1-PWY|ETHYL-PWY|PWY-5912|PWY-5041}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:32, 21 March 2018

Reaction S-ADENMETSYN-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • S-adenosylmethionine synthase 1
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-methionine[c] + 1 ATP[c] + 1 H2O[c] => 1 phosphate[c] + 1 S-adenosyl-L-methionine[c] + 1 diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • SAM-PWY, S-adenosyl-L-methionine biosynthesis: SAM-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • METHIONINE-DEG1-PWY, L-methionine degradation I (to L-homocysteine): METHIONINE-DEG1-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • ETHYL-PWY, ethylene biosynthesis I (plants): ETHYL-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5912, 2'-deoxymugineic acid phytosiderophore biosynthesis: PWY-5912
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5041, S-adenosyl-L-methionine cycle II: PWY-5041
    • 4 reactions found over 4 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Saturated-Fatty-Acyl-ACPs&oldid=34744"