Difference between revisions of "Tiso gene 10958"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOGLUCMUT-RXN PHOSPHOGLUCMUT-RXN] == * direction: ** REVERSIBLE * common name: ** cytoplasmic...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BETA-GLUCURONID-RXN BETA-GLUCURONID-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** beta-gl...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHOSPHOGLUCMUT-RXN PHOSPHOGLUCMUT-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BETA-GLUCURONID-RXN BETA-GLUCURONID-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** cytoplasmic
+
** beta-glucuronidase
−
** pgm_pmm
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/5.4.2.2 EC-5.4.2.2]
+
** [http://enzyme.expasy.org/EC/3.2.1.31 EC-3.2.1.31]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLC-1-P]][c] '''<=>''' 1 [[D-glucopyranose-6-phosphate]][c]
+
** 1 [[WATER]][c] '''+''' 1 [[Beta-D-Glucuronides]][c] '''=>''' 1 [[D-Glucopyranuronate]][c] '''+''' 1 [[Alcohols]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 &alpha;-D-glucopyranose 1-phosphate[c] '''<=>''' 1 D-glucopyranose 6-phosphate[c]
+
** 1 H2O[c] '''+''' 1 a &beta;-D-glucuronoside[c] '''=>''' 1 D-glucopyranuronate[c] '''+''' 1 an alcohol[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13477]]
+
* Gene: [[Tiso_gene_13087]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_4816]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-7238]], sucrose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238]
+
* [[PWY-7247]], &beta;-D-glucuronide and D-glucuronate degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7247 PWY-7247]
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-5384]], sucrose degradation IV (sucrose phosphorylase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5384 PWY-5384]
+
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
−
* [[GLYCOCAT-PWY]], glycogen degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOCAT-PWY GLYCOCAT-PWY]
+
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
−
* [[PWY-7343]], UDP-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7343 PWY-7343]
+
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
−
* [[PWY-3801]], sucrose degradation II (sucrose synthase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-3801 PWY-3801]
+
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-622]], starch biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-622 PWY-622]
+
−
** '''2''' reactions found over '''10''' reactions in the full pathway
+
−
* [[PWY-6731]], starch degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6731 PWY-6731]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[GLUCOSE1PMETAB-PWY]], glucose and glucose-1-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE1PMETAB-PWY GLUCOSE1PMETAB-PWY]
+
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-6737]], starch degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6737 PWY-6737]
+
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-6317]], D-galactose degradation I (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6317 PWY-6317]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-2723]], trehalose degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2723 PWY-2723]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
−
* [[GLYCOGENSYNTH-PWY]], glycogen biosynthesis I (from ADP-D-Glucose): [http://metacyc.org/META/NEW-IMAGE?object=GLYCOGENSYNTH-PWY GLYCOGENSYNTH-PWY]
+
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
−
* [[PWY-5940]], streptomycin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5940 PWY-5940]
+
−
** '''2''' reactions found over '''18''' reactions in the full pathway
+
−
* [[PWY66-422]], D-galactose degradation V (Leloir pathway): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-422 PWY66-422]
+
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
−
* [[PWY-5941]], glycogen degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5941 PWY-5941]
+
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
−
* [[PWY-5661]], GDP-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5661 PWY-5661]
+
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23536 23536]
 
−
* PIR:
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A41801 A41801]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A53614 A53614]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B53614 B53614]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=E70650 E70650]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64803 G64803]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G81947 G81947]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I39487 I39487]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I41215 I41215]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PMRB PMRB]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PMRBI PMRBI]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PMRT PMRT]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S10741 S10741]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S39397 S39397]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41199 S41199]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S41200 S41200]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76847 S76847]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S78440 S78440]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04326 T04326]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04327 T04327]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T12574 T12574]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52656 T52656]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00959 R00959]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01478 R01478]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P36871 P36871]
+
** [http://www.uniprot.org/uniprot/P06760 P06760]
−
** [http://www.uniprot.org/uniprot/P40390 P40390]
+
** [http://www.uniprot.org/uniprot/P08236 P08236]
−
** [http://www.uniprot.org/uniprot/P40391 P40391]
+
** [http://www.uniprot.org/uniprot/P12265 P12265]
−
** [http://www.uniprot.org/uniprot/P95090 P95090]
+
** [http://www.uniprot.org/uniprot/P05804 P05804]
−
** [http://www.uniprot.org/uniprot/P36938 P36938]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/P57002 P57002]
+
{{#set: common name=beta-glucuronidase}}
−
** [http://www.uniprot.org/uniprot/P38569 P38569]
+
{{#set: ec number=EC-3.2.1.31}}
−
** [http://www.uniprot.org/uniprot/P31120 P31120]
+
{{#set: gene associated=Tiso_gene_13087}}
−
** [http://www.uniprot.org/uniprot/P00949 P00949]
+
{{#set: in pathway=PWY-7247}}
−
** [http://www.uniprot.org/uniprot/P38652 P38652]
+
{{#set: reconstruction category=annotation}}
−
** [http://www.uniprot.org/uniprot/Q7M2K5 Q7M2K5]
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
** [http://www.uniprot.org/uniprot/Q16106 Q16106]
+
−
** [http://www.uniprot.org/uniprot/P33401 P33401]
+
−
** [http://www.uniprot.org/uniprot/P37012 P37012]
+
−
** [http://www.uniprot.org/uniprot/P74643 P74643]
+
−
** [http://www.uniprot.org/uniprot/Q51847 Q51847]
+
−
** [http://www.uniprot.org/uniprot/P93804 P93804]
+
−
** [http://www.uniprot.org/uniprot/P93805 P93805]
+
−
** [http://www.uniprot.org/uniprot/P93262 P93262]
+
−
** [http://www.uniprot.org/uniprot/Q9SCY0 Q9SCY0]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=cytoplasmic}}
+
−
{{#set: common name=pgm_pmm}}
+
−
{{#set: ec number=EC-5.4.2.2}}
+
−
{{#set: gene associated=Tiso_gene_13477|Tiso_gene_4816}}
+
−
{{#set: in pathway=PWY-7238|PWY-5384|GLYCOCAT-PWY|PWY-7343|PWY-3801|PWY-622|PWY-6731|GLUCOSE1PMETAB-PWY|PWY-6737|PWY-6317|PWY-2723|GLYCOGENSYNTH-PWY|PWY-5940|PWY66-422|PWY-5941|PWY-5661}}
+
−
{{#set: reconstruction category=manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation}}
+
 
{{#set: reconstruction tool=pathwaytools}}
 
{{#set: reconstruction tool=pathwaytools}}

Revision as of 15:33, 21 March 2018

Reaction BETA-GLUCURONID-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • beta-glucuronidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7247, β-D-glucuronide and D-glucuronate degradation: PWY-7247
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links





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