Difference between revisions of "PWY-7799"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] == * direction: ** LEFT-TO-RIGHT * common name: ** coproporphyrinogen-iii_oxid...")
 
(Created page with "Category:Gene == Gene Tiso_gene_3775 == * left end position: ** 5801 * transcription direction: ** NEGATIVE * right end position: ** 7832 * centisome position: ** 36.10730...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-1461 RXN0-1461] ==
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== Gene Tiso_gene_3775 ==
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* direction:
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* left end position:
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** LEFT-TO-RIGHT
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** 5801
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* common name:
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* transcription direction:
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** coproporphyrinogen-iii_oxidase
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** NEGATIVE
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** coproporphyrinogen_iii_oxidase_chloroplast
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* right end position:
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** coproporphyrinogen_oxidase
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** 7832
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* ec number:
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* centisome position:
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** [http://enzyme.expasy.org/EC/1.3.3.3 EC-1.3.3.3]
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** 36.107307   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* [[GALPMUT-RXN]]
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** 1 [[COPROPORPHYRINOGEN_III]][c] '''+''' 2 [[PROTON]][c] '''+''' 1 [[OXYGEN-MOLECULE]][c] '''=>''' 1 [[PROTOPORPHYRINOGEN]][c] '''+''' 2 [[WATER]][c] '''+''' 2 [[CARBON-DIOXIDE]][c]
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** in-silico_annotation
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* With common name(s):
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***ec-number
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** 1 coproporphyrinogen III[c] '''+''' 2 H+[c] '''+''' 1 oxygen[c] '''=>''' 1 protoporphyrinogen IX[c] '''+''' 2 H2O[c] '''+''' 2 CO2[c]
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** experimental_annotation
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***ec-number
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[OANTIGEN-PWY]]
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* [[Tiso_gene_3671]]
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* [[PWY-6397]]
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** IN-SILICO_ANNOTATION
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* [[PWY-7328]]
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***EC-NUMBER
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* [[PWY-7622]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_13364]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2246]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_2247]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[athaliana]]
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_13365]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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== Pathways ==
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* [[PWY0-1415]], superpathway of heme biosynthesis from uroporphyrinogen-III: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1415 PWY0-1415]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7159]], 3,8-divinyl-chlorophyllide a biosynthesis III (aerobic, light independent): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7159 PWY-7159]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[CHLOROPHYLL-SYN]], 3,8-divinyl-chlorophyllide a biosynthesis I (aerobic, light-dependent): [http://metacyc.org/META/NEW-IMAGE?object=CHLOROPHYLL-SYN CHLOROPHYLL-SYN]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[HEME-BIOSYNTHESIS-II]], heme biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=HEME-BIOSYNTHESIS-II HEME-BIOSYNTHESIS-II]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* [[orthology]]:
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** [[pantograph]]:
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*** [[creinhardtii]]
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*** [[synechocystis]]
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*** [[athaliana]]
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*** [[esiliculosus]]
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* [[manual]]:
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** [[primary_network]]
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* [[annotation]]:
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** [[pathwaytools]]:
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*** [[experimental_annotation]]
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*** [[in-silico_annotation]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: left end position=5801}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18257 18257]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: right end position=7832}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03220 R03220]
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{{#set: centisome position=36.107307    }}
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* UNIPROT:
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{{#set: reaction associated=GALPMUT-RXN}}
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** [http://www.uniprot.org/uniprot/Q9RLE1 Q9RLE1]
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{{#set: pathway associated=OANTIGEN-PWY|PWY-6397|PWY-7328|PWY-7622}}
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** [http://www.uniprot.org/uniprot/P36552 P36552]
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** [http://www.uniprot.org/uniprot/O25376 O25376]
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** [http://www.uniprot.org/uniprot/P36553 P36553]
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** [http://www.uniprot.org/uniprot/P33771 P33771]
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** [http://www.uniprot.org/uniprot/P43899 P43899]
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** [http://www.uniprot.org/uniprot/O25824 O25824]
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** [http://www.uniprot.org/uniprot/P54304 P54304]
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** [http://www.uniprot.org/uniprot/P11353 P11353]
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** [http://www.uniprot.org/uniprot/Q8X8G8 Q8X8G8]
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** [http://www.uniprot.org/uniprot/Q9ZC86 Q9ZC86]
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** [http://www.uniprot.org/uniprot/P36551 P36551]
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** [http://www.uniprot.org/uniprot/P35055 P35055]
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** [http://www.uniprot.org/uniprot/P43898 P43898]
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** [http://www.uniprot.org/uniprot/P72848 P72848]
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** [http://www.uniprot.org/uniprot/P73245 P73245]
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** [http://www.uniprot.org/uniprot/P74132 P74132]
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** [http://www.uniprot.org/uniprot/Q51676 Q51676]
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** [http://www.uniprot.org/uniprot/Q42946 Q42946]
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** [http://www.uniprot.org/uniprot/Q42840 Q42840]
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** [http://www.uniprot.org/uniprot/Q39581 Q39581]
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** [http://www.uniprot.org/uniprot/P95651 P95651]
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** [http://www.uniprot.org/uniprot/Q9RFG1 Q9RFG1]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=coproporphyrinogen-iii_oxidase}}
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{{#set: common name=coproporphyrinogen_iii_oxidase_chloroplast}}
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{{#set: common name=coproporphyrinogen_oxidase}}
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{{#set: ec number=EC-1.3.3.3}}
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{{#set: gene associated=Tiso_gene_3671|Tiso_gene_13364|Tiso_gene_2246|Tiso_gene_2247|Tiso_gene_13365}}
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{{#set: in pathway=PWY0-1415|PWY-7159|CHLOROPHYLL-SYN|HEME-BIOSYNTHESIS-II}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: reconstruction source=creinhardtii|synechocystis|athaliana|esiliculosus}}
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{{#set: reconstruction category=manual}}
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{{#set: reconstruction source=primary_network}}
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{{#set: reconstruction category=annotation}}
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{{#set: reconstruction tool=pathwaytools}}
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{{#set: reconstruction source=experimental_annotation|in-silico_annotation}}
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Revision as of 16:13, 10 January 2018

Gene Tiso_gene_3775

  • left end position:
    • 5801
  • transcription direction:
    • NEGATIVE
  • right end position:
    • 7832
  • centisome position:
    • 36.107307
  • Synonym(s):

Reactions associated

  • GALPMUT-RXN
    • in-silico_annotation
      • ec-number
    • experimental_annotation
      • ec-number

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=PWY-7799&oldid=12017"