Difference between revisions of "Tiso gene 8859"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.34-RXN 1.1.1.34-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** mitochondrial_car...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALLANTOICASE-RXN ALLANTOICASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** allantoicase...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.1.1.34-RXN 1.1.1.34-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ALLANTOICASE-RXN ALLANTOICASE-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ORF
+
** allantoicase
−
** mitochondrial_carrier_protein
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.34 EC-1.1.1.34]
+
** [http://enzyme.expasy.org/EC/3.5.3.4 EC-3.5.3.4]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[CO-A]][c] '''+''' 1 [[MEVALONATE]][c] '''+''' 2 [[NADP]][c] '''<=>''' 2 [[PROTON]][c] '''+''' 2 [[NADPH]][c] '''+''' 1 [[3-HYDROXY-3-METHYL-GLUTARYL-COA]][c]
+
** 1 [[ALLANTOATE]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-1091]][c] '''+''' 1 [[UREA]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 coenzyme A[c] '''+''' 1 (R)-mevalonate[c] '''+''' 2 NADP+[c] '''<=>''' 2 H+[c] '''+''' 2 NADPH[c] '''+''' 1 (S)-3-hydroxy-3-methylglutaryl-CoA[c]
+
** 1 allantoate[c] '''+''' 1 H2O[c] '''=>''' 1 S-ureidoglycolate[c] '''+''' 1 urea[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_17889]]
+
* Gene: [[Tiso_gene_15504]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_16182]]
+
** Source: [[annotation-experimental_annotation]]
−
** IN-SILICO_ANNOTATION
+
*** Assignment: EC-NUMBER
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-922]], mevalonate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-922 PWY-922]
+
* [[PWY-5697]], allantoin degradation to ureidoglycolate I (urea producing): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5697 PWY-5697]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6174]], mevalonate pathway II (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6174 PWY-6174]
+
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-7391]], isoprene biosynthesis II (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7391 PWY-7391]
+
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
−
* [[PWY-7524]], mevalonate pathway III (archaea): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7524 PWY-7524]
+
−
** '''4''' reactions found over '''8''' reactions in the full pathway
+
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 
* RHEA:
 
* RHEA:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15989 15989]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11016 11016]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R02082 R02082]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02422 R02422]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P16393 P16393]
+
** [http://www.uniprot.org/uniprot/P18407 P18407]
−
** [http://www.uniprot.org/uniprot/P14891 P14891]
+
** [http://www.uniprot.org/uniprot/P25335 P25335]
−
** [http://www.uniprot.org/uniprot/P16237 P16237]
+
** [http://www.uniprot.org/uniprot/Q09913 Q09913]
−
** [http://www.uniprot.org/uniprot/P20715 P20715]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/Q59468 Q59468]
+
{{#set: common name=allantoicase}}
−
** [http://www.uniprot.org/uniprot/Q01237 Q01237]
+
{{#set: ec number=EC-3.5.3.4}}
−
** [http://www.uniprot.org/uniprot/Q61671 Q61671]
+
{{#set: gene associated=Tiso_gene_15504}}
−
** [http://www.uniprot.org/uniprot/Q944T9 Q944T9]
+
{{#set: in pathway=PWY-5697}}
−
** [http://www.uniprot.org/uniprot/Q9S9C2 Q9S9C2]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/Q9S999 Q9S999]
+
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
−
** [http://www.uniprot.org/uniprot/Q9S998 Q9S998]
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
−
** [http://www.uniprot.org/uniprot/Q9S997 Q9S997]
+
−
** [http://www.uniprot.org/uniprot/P04035 P04035]
+
−
** [http://www.uniprot.org/uniprot/P00347 P00347]
+
−
** [http://www.uniprot.org/uniprot/P29058 P29058]
+
−
** [http://www.uniprot.org/uniprot/P29057 P29057]
+
−
** [http://www.uniprot.org/uniprot/Q12577 Q12577]
+
−
** [http://www.uniprot.org/uniprot/Q12649 Q12649]
+
−
** [http://www.uniprot.org/uniprot/Q00583 Q00583]
+
−
** [http://www.uniprot.org/uniprot/Q01559 Q01559]
+
−
** [http://www.uniprot.org/uniprot/P48022 P48022]
+
−
** [http://www.uniprot.org/uniprot/Q43825 Q43825]
+
−
** [http://www.uniprot.org/uniprot/Q43826 Q43826]
+
−
** [http://www.uniprot.org/uniprot/P14773 P14773]
+
−
** [http://www.uniprot.org/uniprot/Q7M4W2 Q7M4W2]
+
−
** [http://www.uniprot.org/uniprot/Q7M4W1 Q7M4W1]
+
−
** [http://www.uniprot.org/uniprot/Q7M4W4 Q7M4W4]
+
−
** [http://www.uniprot.org/uniprot/Q7M4W3 Q7M4W3]
+
−
** [http://www.uniprot.org/uniprot/P48019 P48019]
+
−
** [http://www.uniprot.org/uniprot/Q41454 Q41454]
+
−
** [http://www.uniprot.org/uniprot/Q42506 Q42506]
+
−
** [http://www.uniprot.org/uniprot/Q41455 Q41455]
+
−
** [http://www.uniprot.org/uniprot/Q41456 Q41456]
+
−
** [http://www.uniprot.org/uniprot/Q41458 Q41458]
+
−
** [http://www.uniprot.org/uniprot/P48020 P48020]
+
−
** [http://www.uniprot.org/uniprot/Q9FS01 Q9FS01]
+
−
** [http://www.uniprot.org/uniprot/Q42466 Q42466]
+
−
** [http://www.uniprot.org/uniprot/O48624 O48624]
+
−
** [http://www.uniprot.org/uniprot/O04188 O04188]
+
−
** [http://www.uniprot.org/uniprot/O24594 O24594]
+
−
** [http://www.uniprot.org/uniprot/Q41438 Q41438]
+
−
** [http://www.uniprot.org/uniprot/O64966 O64966]
+
−
** [http://www.uniprot.org/uniprot/O64967 O64967]
+
−
** [http://www.uniprot.org/uniprot/Q03163 Q03163]
+
−
** [http://www.uniprot.org/uniprot/Q39628 Q39628]
+
−
** [http://www.uniprot.org/uniprot/P93514 P93514]
+
−
** [http://www.uniprot.org/uniprot/O08424 O08424]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=ORF}}
+
−
{{#set: common name=mitochondrial_carrier_protein}}
+
−
{{#set: ec number=EC-1.1.1.34}}
+
−
{{#set: gene associated=Tiso_gene_17889|Tiso_gene_16182}}
+
−
{{#set: in pathway=PWY-922|PWY-6174|PWY-7391|PWY-7524}}
+
−
{{#set: reconstruction category=annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
−
{{#set: reconstruction tool=pathwaytools}}
+

Revision as of 15:35, 21 March 2018

Reaction ALLANTOICASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • allantoicase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 allantoate[c] + 1 H2O[c] => 1 S-ureidoglycolate[c] + 1 urea[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-5697, allantoin degradation to ureidoglycolate I (urea producing): PWY-5697
    • 2 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





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