Difference between revisions of "DCMP-DEAMINASE-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** diami...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13533 CPD-13533] == * smiles: ** CCC(CC(SCCNC(CCNC(C(C(COP(=O)([O-])OP(OCC1(OC(C(C1OP([O-])...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Metabolite]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DIAMINOPIMDECARB-RXN DIAMINOPIMDECARB-RXN] ==
+
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-13533 CPD-13533] ==
−
* direction:
+
* smiles:
−
** LEFT-TO-RIGHT
+
** CCC(CC(SCCNC(CCNC(C(C(COP(=O)([O-])OP(OCC1(OC(C(C1OP([O-])([O-])=O)O)N3(C=NC2(C(=NC=NC=23)N))))([O-])=O)(C)C)O)=O)=O)=O)O
 
* common name:
 
* common name:
−
** diaminopimelate_decarboxylase
+
** (R)-3-hydroxyvaleryl-CoA
−
* ec number:
+
* inchi key:
−
** [http://enzyme.expasy.org/EC/4.1.1.20 EC-4.1.1.20]
+
** InChIKey=YYGYPCRWZMLSGK-ORUMCERNSA-J
 +
* molecular weight:
 +
** 863.619   
 
* Synonym(s):
 
* Synonym(s):
 +
** D-β-hydroxyvaleryl-CoA
  
−
== Reaction Formula ==
+
== Reaction(s) known to consume the compound ==
−
* With identifiers:
+
== Reaction(s) known to produce the compound ==
−
** 1 [[PROTON]][c] '''+''' 1 [[MESO-DIAMINOPIMELATE]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[LYS]][c]
+
== Reaction(s) of unknown directionality ==
−
* With common name(s):
+
* [[RXN-12560]]
−
** 1 H+[c] '''+''' 1 meso-diaminopimelate[c] '''=>''' 1 CO2[c] '''+''' 1 L-lysine[c]
+
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_10737]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
* [[Tiso_gene_12041]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
−
== Pathways  ==
+
−
* [[PWY-5097]], L-lysine biosynthesis VI: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5097 PWY-5097]
+
−
** '''7''' reactions found over '''7''' reactions in the full pathway
+
−
* [[PWY-2942]], L-lysine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2942 PWY-2942]
+
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
−
* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=DAPLYSINESYN-PWY DAPLYSINESYN-PWY]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
* [[PWY-2941]], L-lysine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2941 PWY-2941]
+
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-athaliana]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-creinhardtii]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-synechocystis]]
+
−
*** Tool: [[pantograph]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[manual]]
+
−
** Source: [[manual-primary_network]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* PUBCHEM:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15101 15101]
+
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=54758578 54758578]
−
* LIGAND-RXN:
+
{{#set: smiles=CCC(CC(SCCNC(CCNC(C(C(COP(=O)([O-])OP(OCC1(OC(C(C1OP([O-])([O-])=O)O)N3(C=NC2(C(=NC=NC=23)N))))([O-])=O)(C)C)O)=O)=O)=O)O}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R00451 R00451]
+
{{#set: common name=(R)-3-hydroxyvaleryl-CoA}}
−
* UNIPROT:
+
{{#set: inchi key=InChIKey=YYGYPCRWZMLSGK-ORUMCERNSA-J}}
−
** [http://www.uniprot.org/uniprot/P19572 P19572]
+
{{#set: molecular weight=863.619    }}
−
** [http://www.uniprot.org/uniprot/P0A5M4 P0A5M4]
+
{{#set: common name=D-β-hydroxyvaleryl-CoA}}
−
** [http://www.uniprot.org/uniprot/P44316 P44316]
+
{{#set: reversible reaction associated=RXN-12560}}
−
** [http://www.uniprot.org/uniprot/P56129 P56129]
+
−
** [http://www.uniprot.org/uniprot/O67262 O67262]
+
−
** [http://www.uniprot.org/uniprot/Q9JWA6 Q9JWA6]
+
−
** [http://www.uniprot.org/uniprot/Q9CG26 Q9CG26]
+
−
** [http://www.uniprot.org/uniprot/P00861 P00861]
+
−
** [http://www.uniprot.org/uniprot/O27390 O27390]
+
−
** [http://www.uniprot.org/uniprot/Q9PII5 Q9PII5]
+
−
** [http://www.uniprot.org/uniprot/Q58497 Q58497]
+
−
** [http://www.uniprot.org/uniprot/O29458 O29458]
+
−
** [http://www.uniprot.org/uniprot/P41023 P41023]
+
−
** [http://www.uniprot.org/uniprot/P23630 P23630]
+
−
** [http://www.uniprot.org/uniprot/P09890 P09890]
+
−
** [http://www.uniprot.org/uniprot/Q55484 Q55484]
+
−
** [http://www.uniprot.org/uniprot/O05321 O05321]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=diaminopimelate_decarboxylase}}
+
−
{{#set: ec number=EC-4.1.1.20}}
+
−
{{#set: gene associated=Tiso_gene_10737|Tiso_gene_12041}}
+
−
{{#set: in pathway=PWY-5097|PWY-2942|DAPLYSINESYN-PWY|PWY-2941}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 16:36, 21 March 2018

Metabolite CPD-13533

  • smiles:
    • CCC(CC(SCCNC(CCNC(C(C(COP(=O)([O-])OP(OCC1(OC(C(C1OP([O-])([O-])=O)O)N3(C=NC2(C(=NC=NC=23)N))))([O-])=O)(C)C)O)=O)=O)=O)O
  • common name:
    • (R)-3-hydroxyvaleryl-CoA
  • inchi key:
    • InChIKey=YYGYPCRWZMLSGK-ORUMCERNSA-J
  • molecular weight:
    • 863.619
  • Synonym(s):
    • D-β-hydroxyvaleryl-CoA

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CCC(CC(SCCNC(CCNC(C(C(COP(=O)([O-])OP(OCC1(OC(C(C1OP([O-])([O-])=O)O)N3(C=NC2(C(=NC=NC=23)N))))([O-])=O)(C)C)O)=O)=O)=O)O" cannot be used as a page name in this wiki.



Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DCMP-DEAMINASE-RXN&oldid=35170"