Difference between revisions of "RXN-8630"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7785 RXN-7785] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/1....")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] == * direction: ** LEFT-TO-RIGHT * Synonym(s): ** PSase ** geranylgerany...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7785 RXN-7785] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=2.5.1.32-RXN 2.5.1.32-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* ec number:
 
−
** [http://enzyme.expasy.org/EC/1.14.11 EC-1.14.11]
 
 
* Synonym(s):
 
* Synonym(s):
 +
** PSase
 +
** geranylgeranyl-diphosphate geranylgeranyltransferase
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[OXYGEN-MOLECULE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[CPD-7088]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[SUC]][c] '''+''' 2 [[WATER]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[CPD-7090]][c]
+
** 2 [[GERANYLGERANYL-PP]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[CPD-464]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 oxygen[c] '''+''' 1 2-oxoglutarate[c] '''+''' 1 (2R,3S,4S)-leucodelphinidin[c] '''=>''' 1 CO2[c] '''+''' 1 succinate[c] '''+''' 2 H2O[c] '''+''' 1 H+[c] '''+''' 1 delphinidin[c]
+
** 2 geranylgeranyl diphosphate[c] '''=>''' 1 diphosphate[c] '''+''' 1 prephytoene diphosphate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_3330]]
+
* Gene: [[Tiso_gene_15914]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5153]], anthocyanin biosynthesis (delphinidin 3-O-glucoside): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5153 PWY-5153]
+
* [[PWY-6287]], neurosporene biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6287 PWY-6287]
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6475]], trans-lycopene biosynthesis II (plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6475 PWY-6475]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22296 22296]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R05037 R05037]
+
** [http://www.genome.jp/dbget-bin/www_bget?R02065 R02065]
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P53609 P53609]
 +
** [http://www.uniprot.org/uniprot/P37295 P37295]
 +
** [http://www.uniprot.org/uniprot/P22872 P22872]
 +
** [http://www.uniprot.org/uniprot/P53610 P53610]
 +
** [http://www.uniprot.org/uniprot/P53612 P53612]
 +
** [http://www.uniprot.org/uniprot/P17056 P17056]
 +
** [http://www.uniprot.org/uniprot/P49293 P49293]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: ec number=EC-1.14.11}}
+
{{#set: common name=PSase|geranylgeranyl-diphosphate geranylgeranyltransferase}}
−
{{#set: gene associated=Tiso_gene_3330}}
+
{{#set: gene associated=Tiso_gene_15914}}
−
{{#set: in pathway=PWY-5153}}
+
{{#set: in pathway=PWY-6287|PWY-6475}}
 
{{#set: reconstruction category=orthology}}
 
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction source=orthology-esiliculosus}}
+
{{#set: reconstruction source=orthology-synechocystis|orthology-esiliculosus}}
 
{{#set: reconstruction tool=pantograph}}
 
{{#set: reconstruction tool=pantograph}}

Revision as of 15:38, 21 March 2018

Reaction 2.5.1.32-RXN

  • direction:
    • LEFT-TO-RIGHT
  • Synonym(s):
    • PSase
    • geranylgeranyl-diphosphate geranylgeranyltransferase

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 2 geranylgeranyl diphosphate[c] => 1 diphosphate[c] + 1 prephytoene diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6287, neurosporene biosynthesis: PWY-6287
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6475, trans-lycopene biosynthesis II (plants): PWY-6475
    • 8 reactions found over 8 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-8630&oldid=35333"