Difference between revisions of "UPH"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GALACTOSE GALACTOSE] == * smiles: ** C(O)C1(OC(O)C(O)C(O)C(O)1) * inchi key: ** InChIKey=WQZGKK...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN] == * direction: ** LEF...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=GALACTOSE GALACTOSE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN] ==
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* smiles:
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* direction:
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** C(O)C1(OC(O)C(O)C(O)C(O)1)
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** LEFT-TO-RIGHT
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* inchi key:
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* ec number:
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** InChIKey=WQZGKKKJIJFFOK-FPRJBGLDSA-N
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** [http://enzyme.expasy.org/EC/2.1.1.37 EC-2.1.1.37]
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* common name:
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** β-D-galactose
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* molecular weight:
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** 180.157   
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* Synonym(s):
 
* Synonym(s):
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** β-D-galactopyranose
 
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** cerebrose
 
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** 6-(hydroxymethyl)tetrahydropyran-2,3,4,5-tetraol
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[BETAGALACTOSID-RXN]]
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** 1 [[DNA-Cytosines]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[5-Methylcytosine-DNA]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[ALDOSE1EPIM-RXN]]
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** 1 a cytosine in DNA[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 H+[c] '''+''' 1 a 5-methylcytosine in DNA[c] '''+''' 1 S-adenosyl-L-homocysteine[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_9438]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_5540]]
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[orthology-creinhardtii]]
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* Gene: [[Tiso_gene_2359]]
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** Source: [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_10467]]
 +
** Source: [[orthology-synechocystis]]
 +
== Pathways  ==
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
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* CAS : 7296-64-2
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* LIGAND-RXN:
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* PUBCHEM:
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** [http://www.genome.jp/dbget-bin/www_bget?R00380 R00380]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=439353 439353]
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* UNIPROT:
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* HMDB : HMDB03449
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** [http://www.uniprot.org/uniprot/P24581 P24581]
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P05102 P05102]
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** [http://www.genome.jp/dbget-bin/www_bget?C00962 C00962]
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** [http://www.uniprot.org/uniprot/P05101 P05101]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P06530 P06530]
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** [http://www.chemspider.com/Chemical-Structure.388476.html 388476]
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** [http://www.uniprot.org/uniprot/O41165 O41165]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/Q98580 Q98580]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=28034 28034]
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** [http://www.uniprot.org/uniprot/Q98567 Q98567]
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* BIGG : gal
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** [http://www.uniprot.org/uniprot/Q59606 Q59606]
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* BIGG : gal-bD
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** [http://www.uniprot.org/uniprot/P0A462 P0A462]
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{{#set: smiles=C(O)C1(OC(O)C(O)C(O)C(O)1)}}
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** [http://www.uniprot.org/uniprot/P71101 P71101]
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{{#set: inchi key=InChIKey=WQZGKKKJIJFFOK-FPRJBGLDSA-N}}
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** [http://www.uniprot.org/uniprot/P50192 P50192]
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{{#set: common name=β-D-galactose}}
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** [http://www.uniprot.org/uniprot/P50185 P50185]
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{{#set: molecular weight=180.157    }}
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** [http://www.uniprot.org/uniprot/Q38652 Q38652]
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{{#set: common name=β-D-galactopyranose|cerebrose|6-(hydroxymethyl)tetrahydropyran-2,3,4,5-tetraol}}
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** [http://www.uniprot.org/uniprot/P52311 P52311]
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{{#set: produced by=BETAGALACTOSID-RXN}}
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** [http://www.uniprot.org/uniprot/P31974 P31974]
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{{#set: reversible reaction associated=ALDOSE1EPIM-RXN}}
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** [http://www.uniprot.org/uniprot/P30774 P30774]
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** [http://www.uniprot.org/uniprot/P23941 P23941]
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** [http://www.uniprot.org/uniprot/P25262 P25262]
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** [http://www.uniprot.org/uniprot/P25267 P25267]
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** [http://www.uniprot.org/uniprot/P25263 P25263]
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** [http://www.uniprot.org/uniprot/P15446 P15446]
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** [http://www.uniprot.org/uniprot/P24600 P24600]
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** [http://www.uniprot.org/uniprot/P23737 P23737]
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** [http://www.uniprot.org/uniprot/P13906 P13906]
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** [http://www.uniprot.org/uniprot/P14243 P14243]
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** [http://www.uniprot.org/uniprot/P14244 P14244]
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** [http://www.uniprot.org/uniprot/P14230 P14230]
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** [http://www.uniprot.org/uniprot/P11409 P11409]
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** [http://www.uniprot.org/uniprot/P10283 P10283]
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** [http://www.uniprot.org/uniprot/P25265 P25265]
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** [http://www.uniprot.org/uniprot/P0AED9 P0AED9]
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** [http://www.uniprot.org/uniprot/P20589 P20589]
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** [http://www.uniprot.org/uniprot/Q02778 Q02778]
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** [http://www.uniprot.org/uniprot/P95820 P95820]
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** [http://www.uniprot.org/uniprot/P70750 P70750]
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** [http://www.uniprot.org/uniprot/P25264 P25264]
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** [http://www.uniprot.org/uniprot/Q47257 Q47257]
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** [http://www.uniprot.org/uniprot/O87740 O87740]
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** [http://www.uniprot.org/uniprot/P43420 P43420]
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** [http://www.uniprot.org/uniprot/Q9JWD8 Q9JWD8]
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** [http://www.uniprot.org/uniprot/Q9JU80 Q9JU80]
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** [http://www.uniprot.org/uniprot/P08455 P08455]
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** [http://www.uniprot.org/uniprot/P11408 P11408]
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** [http://www.uniprot.org/uniprot/P17044 P17044]
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** [http://www.uniprot.org/uniprot/P19888 P19888]
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** [http://www.uniprot.org/uniprot/P00476 P00476]
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** [http://www.uniprot.org/uniprot/P09915 P09915]
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** [http://www.uniprot.org/uniprot/P68586 P68586]
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** [http://www.uniprot.org/uniprot/Q9ZLZ0 Q9ZLZ0]
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** [http://www.uniprot.org/uniprot/O24892 O24892]
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** [http://www.uniprot.org/uniprot/P45000 P45000]
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** [http://www.uniprot.org/uniprot/P29567 P29567]
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** [http://www.uniprot.org/uniprot/P25282 P25282]
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** [http://www.uniprot.org/uniprot/Q9JQR8 Q9JQR8]
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** [http://www.uniprot.org/uniprot/O25746 O25746]
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** [http://www.uniprot.org/uniprot/P36216 P36216]
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** [http://www.uniprot.org/uniprot/P25283 P25283]
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** [http://www.uniprot.org/uniprot/O23273 O23273]
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** [http://www.uniprot.org/uniprot/Q92072 Q92072]
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** [http://www.uniprot.org/uniprot/P79922 P79922]
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** [http://www.uniprot.org/uniprot/O08431 O08431]
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** [http://www.uniprot.org/uniprot/Q9Z330 Q9Z330]
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** [http://www.uniprot.org/uniprot/P13864 P13864]
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** [http://www.uniprot.org/uniprot/Q9S9I8 Q9S9I8]
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** [http://www.uniprot.org/uniprot/P34881 P34881]
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** [http://www.uniprot.org/uniprot/Q60171 Q60171]
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** [http://www.uniprot.org/uniprot/O65343 O65343]
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** [http://www.uniprot.org/uniprot/O49022 O49022]
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** [http://www.uniprot.org/uniprot/Q9T0I1 Q9T0I1]
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** [http://www.uniprot.org/uniprot/O49889 O49889]
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** [http://www.uniprot.org/uniprot/O42731 O42731]
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** [http://www.uniprot.org/uniprot/O48866 O48866]
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** [http://www.uniprot.org/uniprot/O48867 O48867]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.1.1.37}}
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{{#set: gene associated=Tiso_gene_9438|Tiso_gene_5540|Tiso_gene_2359|Tiso_gene_10467}}
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{{#set: in pathway=}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-synechocystis|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}

Revision as of 15:38, 21 March 2018

Reaction DNA-CYTOSINE-5--METHYLTRANSFERASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=UPH&oldid=35350"