Difference between revisions of "KETOISOCAPROATE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14229 RXN-14229] == * direction: ** REVERSIBLE * common name: ** acyl-coenzyme_a_oxidase ** acy...")
(Created page with "Category:Gene == Gene Tiso_gene_18839 == * right end position: ** 1765 * transcription direction: ** POSITIVE * left end position: ** 40 * centisome position: ** 1.447178...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14229 RXN-14229] ==
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== Gene Tiso_gene_18839 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 1765
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* common name:
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* transcription direction:
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** acyl-coenzyme_a_oxidase
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** POSITIVE
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** acyl-_dehydrogenase
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* left end position:
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** ORF
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** 40
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** acyl-CoA_dehydrogenase
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* centisome position:
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* ec number:
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** 1.447178   
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** [http://enzyme.expasy.org/EC/1.3.8.7 EC-1.3.8.7]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[OHACYL-COA-DEHYDROG-RXN]]
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** 1 [[PROTON]][c] '''+''' 1 [[ETF-Oxidized]][c] '''+''' 1 [[CPD-196]][c] '''<=>''' 1 [[CPD0-2108]][c] '''+''' 1 [[ETF-Reduced]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 H+[c] '''+''' 1 an oxidized electron-transfer flavoprotein[c] '''+''' 1 octanoyl-CoA[c] '''<=>''' 1 trans-oct-2-enoyl-CoA[c] '''+''' 1 a reduced electron-transfer flavoprotein[c]
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* Reaction: [[RXN-10698]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[RXN-10702]]
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* [[Tiso_gene_17967]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-10703]]
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* [[Tiso_gene_883]]
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** Source: [[annotation-in-silico_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-11245]]
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* [[Tiso_gene_6475]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-11662]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_18566]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN-12490]]
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***EC-NUMBER
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[esiliculosus]]
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*** Assignment: ec-number
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* [[Tiso_gene_8272]]
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* Reaction: [[RXN-12570]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_5991]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN-12705]]
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***EC-NUMBER
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_14511]]
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*** Assignment: ec-number
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** [[pantograph]]-[[esiliculosus]]
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* Reaction: [[RXN-12750]]
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* [[Tiso_gene_16631]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-16133]]
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== Pathways  ==
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** Source: [[annotation-in-silico_annotation]]
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== Reconstruction information  ==
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*** Assignment: ec-number
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* Category: [[orthology]]
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* Reaction: [[RXN-17777]]
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** Source: [[orthology-esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pantograph]]
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*** Assignment: ec-number
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* Category: [[annotation]]
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* Reaction: [[RXN-17781]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17786]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17790]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17793]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17794]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17797]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-17798]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-905]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN0-2044]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[P162-PWY]]
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* [[PWY-5177]]
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* [[PWY-6583]]
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* [[PWY-6883]]
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* [[PWY-5136]]
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* [[PWY-7778]]
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* [[PWY-7779]]
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* [[PWY-7094]]
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* [[PWY66-391]]
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* [[PWY-5789]]
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* [[PWY-81]]
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* [[CENTFERM-PWY]]
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* [[PWY-6945]]
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* [[PWY0-321]]
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* [[PWY-7007]]
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* [[PWY-6435]]
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* [[PWY-7216]]
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* [[PWY-1361]]
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* [[PWY-6946]]
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* [[FAO-PWY]]
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* [[PWY-6944]]
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* [[PWY-735]]
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* [[PWY-7401]]
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* [[PWY-6863]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=1765}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=30944 30944]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=40}}
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** [http://www.genome.jp/dbget-bin/www_bget?R03777 R03777]
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{{#set: centisome position=1.447178    }}
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{{#set: direction=REVERSIBLE}}
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{{#set: reaction associated=OHACYL-COA-DEHYDROG-RXN|RXN-10698|RXN-10702|RXN-10703|RXN-11245|RXN-11662|RXN-12490|RXN-12570|RXN-12705|RXN-12750|RXN-16133|RXN-17777|RXN-17781|RXN-17786|RXN-17790|RXN-17793|RXN-17794|RXN-17797|RXN-17798|RXN-905|RXN0-2044}}
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{{#set: common name=acyl-coenzyme_a_oxidase}}
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{{#set: pathway associated=P162-PWY|PWY-5177|PWY-6583|PWY-6883|PWY-5136|PWY-7778|PWY-7779|PWY-7094|PWY66-391|PWY-5789|PWY-81|CENTFERM-PWY|PWY-6945|PWY0-321|PWY-7007|PWY-6435|PWY-7216|PWY-1361|PWY-6946|FAO-PWY|PWY-6944|PWY-735|PWY-7401|PWY-6863}}
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{{#set: common name=acyl-_dehydrogenase}}
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−
{{#set: common name=ORF}}
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{{#set: common name=acyl-CoA_dehydrogenase}}
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{{#set: ec number=EC-1.3.8.7}}
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{{#set: gene associated=Tiso_gene_17967|Tiso_gene_883|Tiso_gene_6475|Tiso_gene_18566|Tiso_gene_8272|Tiso_gene_5991|Tiso_gene_14511|Tiso_gene_16631}}
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−
{{#set: in pathway=}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:39, 21 March 2018

Gene Tiso_gene_18839

  • right end position:
    • 1765
  • transcription direction:
    • POSITIVE
  • left end position:
    • 40
  • centisome position:
    • 1.447178
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=KETOISOCAPROATE-RXN&oldid=35436"