Difference between revisions of "TRNA-pseudouridine-38-40"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10702 RXN-10702] == * direction: ** LEFT-TO-RIGHT * common name: ** 3-hydroxyacyl-_dehydrogenas...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6383 RXN-6383] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.expasy.org/EC/4.2.1...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-10702 RXN-10702] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-6383 RXN-6383] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* common name:
+
−
** 3-hydroxyacyl-_dehydrogenase
+
−
** hydroxyacyl-coenzyme_a_mitochondrial
+
−
** hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.1.1.35 EC-1.1.1.35]
+
** [http://enzyme.expasy.org/EC/4.2.1.116 EC-4.2.1.116]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[NAD]][c] '''+''' 1 [[CPD-11523]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[CPD-11524]][c]
+
** 1 [[3-HYDROXY-PROPIONYL-COA]][c] '''<=>''' 1 [[ACRYLYL-COA]][c] '''+''' 1 [[WATER]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 NAD+[c] '''+''' 1 OPC6-3-hydroxyacyl-CoA[c] '''=>''' 1 H+[c] '''+''' 1 NADH[c] '''+''' 1 OPC6-3-ketoacyl-CoA[c]
+
** 1 3-hydroxypropanoyl-CoA[c] '''<=>''' 1 acryloyl-CoA[c] '''+''' 1 H2O[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_18838]]
+
* Gene: [[Tiso_gene_5857]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_14262]]
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** Source: [[orthology-creinhardtii]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_16703]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
* Gene: [[Tiso_gene_14257]]
−
* [[Tiso_gene_18839]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
−
* [[Tiso_gene_14027]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_14026]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_5857]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-735]], jasmonic acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-735 PWY-735]
+
* [[PWY-7574]], propanoyl-CoA degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7574 PWY-7574]
−
** '''15''' reactions found over '''19''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-3941]], &beta;-alanine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3941 PWY-3941]
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5743]], 3-hydroxypropanoate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5743 PWY-5743]
 +
** '''4''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5789]], 3-hydroxypropanoate/4-hydroxybutanate cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5789 PWY-5789]
 +
** '''8''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-5744]], glyoxylate assimilation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5744 PWY-5744]
 +
** '''2''' reactions found over '''11''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
* Category: [[annotation]]
 
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* RHEA:
−
{{#set: common name=3-hydroxyacyl-_dehydrogenase}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26518 26518]
−
{{#set: common name=hydroxyacyl-coenzyme_a_mitochondrial}}
+
* LIGAND-RXN:
−
{{#set: common name=hydroxyacyl-coenzyme_a_dehydrogenase_3-ketoacyl-coenzyme_a_thiolase_enoyl-coenzyme_a_hydratasealpha_subunit}}
+
** [http://www.genome.jp/dbget-bin/www_bget?R03045 R03045]
−
{{#set: ec number=EC-1.1.1.35}}
+
{{#set: direction=REVERSIBLE}}
−
{{#set: gene associated=Tiso_gene_18838|Tiso_gene_14262|Tiso_gene_18839|Tiso_gene_14027|Tiso_gene_14026|Tiso_gene_5857}}
+
{{#set: ec number=EC-4.2.1.116}}
−
{{#set: in pathway=PWY-735}}
+
{{#set: gene associated=Tiso_gene_5857|Tiso_gene_16703|Tiso_gene_14257}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: in pathway=PWY-7574|PWY-3941|PWY-5743|PWY-5789|PWY-5744}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction category=orthology}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 15:41, 21 March 2018

Reaction RXN-6383

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7574, propanoyl-CoA degradation II: PWY-7574
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-3941, β-alanine biosynthesis II: PWY-3941
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5743, 3-hydroxypropanoate cycle: PWY-5743
    • 4 reactions found over 11 reactions in the full pathway
  • PWY-5789, 3-hydroxypropanoate/4-hydroxybutanate cycle: PWY-5789
    • 8 reactions found over 16 reactions in the full pathway
  • PWY-5744, glyoxylate assimilation: PWY-5744
    • 2 reactions found over 11 reactions in the full pathway

Reconstruction information

External links




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