Difference between revisions of "RXN-15044"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=D-SEDOHEPTULOSE-7-P D-SEDOHEPTULOSE-7-P] == * common name: ** D-sedoheptulose 7-phosphate * Syn...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] == * direction: ** LEFT-TO-RIGHT * common name: ** atp-dependent_rna_helicase_...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=D-SEDOHEPTULOSE-7-P D-SEDOHEPTULOSE-7-P] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11109 RXN-11109] ==
 +
* direction:
 +
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** D-sedoheptulose 7-phosphate
+
** atp-dependent_rna_helicase_ded1
 +
** rna_helicase
 +
** dead_box_rna_helicase
 +
** ORF
 +
** dead_box_helicase
 +
** atp-dependent_rna_helicase-like_protein_db10
 +
* ec number:
 +
** [http://enzyme.expasy.org/EC/3.6.4.13 EC-3.6.4.13]
 
* Synonym(s):
 
* Synonym(s):
−
** D-Sedoheptulose-7-P
 
−
** heptulose 7-phosphate
 
−
** sedoheptulose-7-P
 
−
** sedo-heptulose-7-phosphate
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
* [[RXN0-6541]]
+
* With identifiers:
−
== Reaction(s) known to produce the compound ==
+
** 1 [[Wound-RNA]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[Unwound-RNA]][c] '''+''' 1 [[PROTON]][c]
−
* [[SEDOHEPTULOSE-BISPHOSPHATASE-RXN]]
+
* With common name(s):
−
== Reaction(s) of unknown directionality ==
+
** 1 wound RNA[c] '''+''' 1 ATP[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 an unwound RNA[c] '''+''' 1 H+[c]
−
* [[R08575]]
+
 
−
* [[1TRANSKETO-RXN]]
+
== Genes associated with this reaction  ==
−
* [[TRANSALDOL-RXN]]
+
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_13862]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_15465]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_11551]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_5272]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_17804]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_9370]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_13864]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_14774]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_17819]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
* Gene: [[Tiso_gene_13863]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: common name=D-sedoheptulose 7-phosphate}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=D-Sedoheptulose-7-P|heptulose 7-phosphate|sedoheptulose-7-P|sedo-heptulose-7-phosphate}}
+
{{#set: common name=atp-dependent_rna_helicase_ded1}}
−
{{#set: consumed by=RXN0-6541}}
+
{{#set: common name=rna_helicase}}
−
{{#set: produced by=SEDOHEPTULOSE-BISPHOSPHATASE-RXN}}
+
{{#set: common name=dead_box_rna_helicase}}
−
{{#set: reversible reaction associated=R08575|1TRANSKETO-RXN|TRANSALDOL-RXN}}
+
{{#set: common name=ORF}}
 +
{{#set: common name=dead_box_helicase}}
 +
{{#set: common name=atp-dependent_rna_helicase-like_protein_db10}}
 +
{{#set: ec number=EC-3.6.4.13}}
 +
{{#set: gene associated=Tiso_gene_13862|Tiso_gene_15465|Tiso_gene_11551|Tiso_gene_5272|Tiso_gene_17804|Tiso_gene_9370|Tiso_gene_13864|Tiso_gene_14774|Tiso_gene_17819|Tiso_gene_13863}}
 +
{{#set: in pathway=}}
 +
{{#set: reconstruction category=orthology|manual|annotation}}
 +
{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:41, 21 March 2018

Reaction RXN-11109

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • atp-dependent_rna_helicase_ded1
    • rna_helicase
    • dead_box_rna_helicase
    • ORF
    • dead_box_helicase
    • atp-dependent_rna_helicase-like_protein_db10
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 wound RNA[c] + 1 ATP[c] + 1 H2O[c] => 1 phosphate[c] + 1 ADP[c] + 1 an unwound RNA[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-15044&oldid=35631"