Difference between revisions of "RXN-17860"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN] == * direction: ** LEFT-...")
(Created page with "Category:Gene == Gene Tiso_gene_12021 == * right end position: ** 2443 * transcription direction: ** NEGATIVE * left end position: ** 82 * centisome position: ** 1.1136764...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN CAFFEOYL-COA-O-METHYLTRANSFERASE-RXN] ==
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== Gene Tiso_gene_12021 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2443
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* ec number:
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* transcription direction:
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** [http://enzyme.expasy.org/EC/2.1.1.104 EC-2.1.1.104]
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** NEGATIVE
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* left end position:
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** 82
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* centisome position:
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** 1.1136764   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[AGK]]
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** 1 [[CAFFEOYL-COA]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c] '''+''' 1 [[FERULOYL-COA]][c]
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** Source: [[orthology-creinhardtii]]
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* With common name(s):
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* Reaction: [[GLUTKIN-RXN]]
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** 1 trans-caffeoyl-CoA[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 H+[c] '''+''' 1 S-adenosyl-L-homocysteine[c] '''+''' 1 feruloyl-CoA[c]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[annotation-experimental_annotation]]
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Genes have been associated with this reaction based on different elements listed below.
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*** Assignment: ec-number
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* [[Tiso_gene_10561]]
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** Source: [[orthology-synechocystis]]
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** [[pantograph]]-[[athaliana]]
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** Source: [[orthology-creinhardtii]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways associated ==
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* [[Tiso_gene_14561]]
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* [[PWY-6922]]
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** [[pantograph]]-[[athaliana]]
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* [[PROSYN-PWY]]
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== Pathways  ==
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* [[ARGININE-SYN4-PWY]]
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* [[PWY-6792]], scopoletin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6792 PWY-6792]
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* [[PWY-3341]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[CITRULBIO-PWY]]
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* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
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** '''9''' reactions found over '''19''' reactions in the full pathway
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* [[PWY-5710]], capsaicin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5710 PWY-5710]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7498]], phenylpropanoids methylation (ice plant): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7498 PWY-7498]
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** '''2''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-6039]], chlorogenic acid biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6039 PWY-6039]
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** '''1''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7398]], coumarins biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7398 PWY-7398]
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** '''3''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-361]], phenylpropanoid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-361 PWY-361]
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** '''7''' reactions found over '''15''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2443}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16925 16925]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=82}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01942 R01942]
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{{#set: centisome position=1.1136764    }}
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* UNIPROT:
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{{#set: reaction associated=AGK|GLUTKIN-RXN}}
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** [http://www.uniprot.org/uniprot/P28034 P28034]
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{{#set: pathway associated=PWY-6922|PROSYN-PWY|ARGININE-SYN4-PWY|PWY-3341|CITRULBIO-PWY}}
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** [http://www.uniprot.org/uniprot/O65307 O65307]
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** [http://www.uniprot.org/uniprot/Q42945 Q42945]
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** [http://www.uniprot.org/uniprot/O24144 O24144]
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** [http://www.uniprot.org/uniprot/O24149 O24149]
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** [http://www.uniprot.org/uniprot/O24150 O24150]
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** [http://www.uniprot.org/uniprot/O24151 O24151]
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** [http://www.uniprot.org/uniprot/O04899 O04899]
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** [http://www.uniprot.org/uniprot/O49499 O49499]
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** [http://www.uniprot.org/uniprot/Q9SVI7 Q9SVI7]
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** [http://www.uniprot.org/uniprot/Q40313 Q40313]
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** [http://www.uniprot.org/uniprot/Q43095 Q43095]
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** [http://www.uniprot.org/uniprot/O04854 O04854]
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** [http://www.uniprot.org/uniprot/O65162 O65162]
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** [http://www.uniprot.org/uniprot/O65362 O65362]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: ec number=EC-2.1.1.104}}
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{{#set: gene associated=Tiso_gene_10561|Tiso_gene_14561}}
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{{#set: in pathway=PWY-6792|PWY-1121|PWY-5710|PWY-7498|PWY-6039|PWY-7398|PWY-361}}
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{{#set: reconstruction category=orthology}}
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{{#set: reconstruction source=orthology-athaliana|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph}}
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Revision as of 15:42, 21 March 2018

Gene Tiso_gene_12021

  • right end position:
    • 2443
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 82
  • centisome position:
    • 1.1136764
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-17860&oldid=35797"