Difference between revisions of "CPD-17927"
From metabolic_network
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN1G-1436 RXN1G-1436] == * direction: ** LEFT-TO-RIGHT * common name: ** trehalose-phosphatase * e...") |
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINKIN-RXN RIBOFLAVINKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** riboflavin_...") |
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[[Category:Reaction]] | [[Category:Reaction]] | ||
− | == Reaction [http://metacyc.org/META/NEW-IMAGE?object= | + | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINKIN-RXN RIBOFLAVINKIN-RXN] == |
* direction: | * direction: | ||
** LEFT-TO-RIGHT | ** LEFT-TO-RIGHT | ||
* common name: | * common name: | ||
− | ** | + | ** riboflavin_kinase |
* ec number: | * ec number: | ||
− | ** [http://enzyme.expasy.org/EC/ | + | ** [http://enzyme.expasy.org/EC/2.7.1.26 EC-2.7.1.26] |
* Synonym(s): | * Synonym(s): | ||
== Reaction Formula == | == Reaction Formula == | ||
* With identifiers: | * With identifiers: | ||
− | ** 1 [[ | + | ** 1 [[ATP]][c] '''+''' 1 [[RIBOFLAVIN]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[FMN]][c] '''+''' 1 [[PROTON]][c] |
* With common name(s): | * With common name(s): | ||
− | ** 1 | + | ** 1 ATP[c] '''+''' 1 riboflavin[c] '''=>''' 1 ADP[c] '''+''' 1 FMN[c] '''+''' 1 H+[c] |
== Genes associated with this reaction == | == Genes associated with this reaction == | ||
Genes have been associated with this reaction based on different elements listed below. | Genes have been associated with this reaction based on different elements listed below. | ||
− | * [[ | + | * Gene: [[Tiso_gene_7479]] |
− | ** | + | ** Source: [[annotation-in-silico_annotation]] |
− | ***AUTOMATED-NAME-MATCH | + | *** Assignment: AUTOMATED-NAME-MATCH |
− | * [[ | + | ** Source: [[orthology-athaliana]] |
− | ** [[ | + | ** Source: [[orthology-synechocystis]] |
+ | * Gene: [[Tiso_gene_16837]] | ||
+ | ** Source: [[orthology-esiliculosus]] | ||
+ | * Gene: [[Tiso_gene_1086]] | ||
+ | ** Source: [[annotation-in-silico_annotation]] | ||
+ | *** Assignment: EC-NUMBER | ||
+ | ** Source: [[orthology-synechocystis]] | ||
== Pathways == | == Pathways == | ||
− | * [[ | + | * [[PWY66-366]], flavin biosynthesis IV (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=PWY66-366 PWY66-366] |
− | ** ''' | + | ** '''2''' reactions found over '''2''' reactions in the full pathway |
+ | * [[PWY-6168]], flavin biosynthesis III (fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6168 PWY-6168] | ||
+ | ** '''6''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY] | ||
+ | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-5523]], 5,6-dimethylbenzimidazole biosynthesis I (aerobic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5523 PWY-5523] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
== Reconstruction information == | == Reconstruction information == | ||
* Category: [[orthology]] | * Category: [[orthology]] | ||
+ | ** Source: [[orthology-athaliana]] | ||
+ | *** Tool: [[pantograph]] | ||
+ | ** Source: [[orthology-synechocystis]] | ||
+ | *** Tool: [[pantograph]] | ||
** Source: [[orthology-esiliculosus]] | ** Source: [[orthology-esiliculosus]] | ||
*** Tool: [[pantograph]] | *** Tool: [[pantograph]] | ||
Line 33: | Line 49: | ||
*** Tool: [[pathwaytools]] | *** Tool: [[pathwaytools]] | ||
== External links == | == External links == | ||
+ | * RHEA: | ||
+ | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14357 14357] | ||
+ | * LIGAND-RXN: | ||
+ | ** [http://www.genome.jp/dbget-bin/www_bget?R00549 R00549] | ||
+ | * UNIPROT: | ||
+ | ** [http://www.uniprot.org/uniprot/Q9JVY5 Q9JVY5] | ||
+ | ** [http://www.uniprot.org/uniprot/Q9PHS7 Q9PHS7] | ||
+ | ** [http://www.uniprot.org/uniprot/Q59263 Q59263] | ||
{{#set: direction=LEFT-TO-RIGHT}} | {{#set: direction=LEFT-TO-RIGHT}} | ||
− | {{#set: common name= | + | {{#set: common name=riboflavin_kinase}} |
− | {{#set: ec number=EC- | + | {{#set: ec number=EC-2.7.1.26}} |
− | {{#set: gene associated= | + | {{#set: gene associated=Tiso_gene_7479|Tiso_gene_16837|Tiso_gene_1086}} |
− | {{#set: in pathway= | + | {{#set: in pathway=PWY66-366|PWY-6168|RIBOSYN2-PWY|PWY-5523}} |
{{#set: reconstruction category=orthology|annotation}} | {{#set: reconstruction category=orthology|annotation}} | ||
− | {{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}} | + | {{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}} |
{{#set: reconstruction tool=pantograph|pathwaytools}} | {{#set: reconstruction tool=pantograph|pathwaytools}} |
Revision as of 15:43, 21 March 2018
Contents
Reaction RIBOFLAVINKIN-RXN
- direction:
- LEFT-TO-RIGHT
- common name:
- riboflavin_kinase
- ec number:
- Synonym(s):
Reaction Formula
- With identifiers:
- 1 ATP[c] + 1 RIBOFLAVIN[c] => 1 ADP[c] + 1 FMN[c] + 1 PROTON[c]
- With common name(s):
- 1 ATP[c] + 1 riboflavin[c] => 1 ADP[c] + 1 FMN[c] + 1 H+[c]
Genes associated with this reaction
Genes have been associated with this reaction based on different elements listed below.
- Gene: Tiso_gene_7479
- Source: annotation-in-silico_annotation
- Assignment: AUTOMATED-NAME-MATCH
- Source: orthology-athaliana
- Source: orthology-synechocystis
- Source: annotation-in-silico_annotation
- Gene: Tiso_gene_16837
- Source: orthology-esiliculosus
- Gene: Tiso_gene_1086
- Source: annotation-in-silico_annotation
- Assignment: EC-NUMBER
- Source: orthology-synechocystis
- Source: annotation-in-silico_annotation
Pathways
- PWY66-366, flavin biosynthesis IV (mammalian): PWY66-366
- 2 reactions found over 2 reactions in the full pathway
- PWY-6168, flavin biosynthesis III (fungi): PWY-6168
- 6 reactions found over 9 reactions in the full pathway
- RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
- 7 reactions found over 9 reactions in the full pathway
- PWY-5523, 5,6-dimethylbenzimidazole biosynthesis I (aerobic): PWY-5523
- 1 reactions found over 3 reactions in the full pathway
Reconstruction information
- Category: orthology
- Source: orthology-athaliana
- Tool: pantograph
- Source: orthology-synechocystis
- Tool: pantograph
- Source: orthology-esiliculosus
- Tool: pantograph
- Source: orthology-athaliana
- Category: annotation
- Source: annotation-in-silico_annotation
- Tool: pathwaytools
- Source: annotation-in-silico_annotation
External links