Difference between revisions of "Tiso gene 9986"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14728 RXN-14728] == * direction: ** REVERSIBLE * common name: ** amidase * ec number: ** [http:...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1104 RXN-1104] == * direction: ** LEFT-TO-RIGHT * common name: ** caffeate_o-methyltransferase...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-14728 RXN-14728] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-1104 RXN-1104] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** amidase
+
** caffeate_o-methyltransferase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.5.1.4 EC-3.5.1.4]
+
** [http://enzyme.expasy.org/EC/2.1.1.68 EC-2.1.1.68]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ACETAMIDE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[ACET]][c]
+
** 1 [[S-ADENOSYLMETHIONINE]][c] '''+''' 1 [[CPD-676]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[FERULIC-ACID]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 acetamide[c] '''+''' 1 H2O[c] '''<=>''' 1 ammonium[c] '''+''' 1 acetate[c]
+
** 1 S-adenosyl-L-methionine[c] '''+''' 1 trans-caffeate[c] '''=>''' 1 H+[c] '''+''' 1 ferulate[c] '''+''' 1 S-adenosyl-L-homocysteine[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13682]]
+
* Gene: [[Tiso_gene_18971]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
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*** Assignment: AUTOMATED-NAME-MATCH
 +
* Gene: [[Tiso_gene_18257]]
 +
** Source: [[orthology-esiliculosus]]
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-2181]], free phenylpropanoid acid biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2181 PWY-2181]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7498]], phenylpropanoids methylation (ice plant): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7498 PWY-7498]
 +
** '''2''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-1121]], suberin monomers biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-1121 PWY-1121]
 +
** '''9''' reactions found over '''19''' reactions in the full pathway
 +
* [[PWY-7186]], superpathway of scopolin and esculin biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7186 PWY-7186]
 +
** '''2''' reactions found over '''14''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20225 20225]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00321 R00321]
+
** [http://www.genome.jp/dbget-bin/www_bget?R03366 R03366]
−
{{#set: direction=REVERSIBLE}}
+
* UNIPROT:
−
{{#set: common name=amidase}}
+
** [http://www.uniprot.org/uniprot/Q41086 Q41086]
−
{{#set: ec number=EC-3.5.1.4}}
+
** [http://www.uniprot.org/uniprot/P28002 P28002]
−
{{#set: gene associated=Tiso_gene_13682}}
+
** [http://www.uniprot.org/uniprot/Q00763 Q00763]
−
{{#set: in pathway=}}
+
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: common name=caffeate_o-methyltransferase}}
−
{{#set: reconstruction source=annotation-in-silico_annotation}}
+
{{#set: ec number=EC-2.1.1.68}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: gene associated=Tiso_gene_18971|Tiso_gene_18257}}
 +
{{#set: in pathway=PWY-2181|PWY-7498|PWY-1121|PWY-7186}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:44, 21 March 2018

Reaction RXN-1104

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • caffeate_o-methyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-2181, free phenylpropanoid acid biosynthesis: PWY-2181
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7498, phenylpropanoids methylation (ice plant): PWY-7498
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-1121, suberin monomers biosynthesis: PWY-1121
    • 9 reactions found over 19 reactions in the full pathway
  • PWY-7186, superpathway of scopolin and esculin biosynthesis: PWY-7186
    • 2 reactions found over 14 reactions in the full pathway

Reconstruction information

External links





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