Difference between revisions of "Tiso gene 16842"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Gene == Gene Tiso_gene_9739 == * left end position: ** 3701 * transcription direction: ** POSITIVE * right end position: ** 5342 * centisome position: ** 33.33934...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** GDP-mannose...")
Line 1: Line 1:
−
[[Category:Gene]]
+
[[Category:Reaction]]
−
== Gene Tiso_gene_9739 ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GDPMANDEHYDRA-RXN GDPMANDEHYDRA-RXN] ==
−
* left end position:
+
* direction:
−
** 3701
+
** LEFT-TO-RIGHT
−
* transcription direction:
+
* common name:
−
** POSITIVE
+
** GDP-mannose 4,6-dehydratase
−
* right end position:
+
* ec number:
−
** 5342
+
** [http://enzyme.expasy.org/EC/4.2.1.47 EC-4.2.1.47]
−
* centisome position:
+
−
** 33.33934   
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reactions associated ==
+
== Reaction Formula ==
−
* [[ATCM]]
+
* With identifiers:
−
** [[pantograph]]-[[creinhardtii]]
+
** 1 [[GDP-MANNOSE]][c] '''=>''' 1 [[GDP-4-DEHYDRO-6-DEOXY-D-MANNOSE]][c] '''+''' 1 [[WATER]][c]
−
* [[ATCMf]]
+
* With common name(s):
−
** [[pantograph]]-[[creinhardtii]]
+
** 1 GDP-α-D-mannose[c] '''=>''' 1 GDP-4-dehydro-α-D-rhamnose[c] '''+''' 1 H2O[c]
−
* [[ATDCM]]
+
 
−
** [[pantograph]]-[[creinhardtii]]
+
== Genes associated with this reaction  ==
−
* [[ATDCMf]]
+
Genes have been associated with this reaction based on different elements listed below.
−
** [[pantograph]]-[[creinhardtii]]
+
* Gene: [[Tiso_gene_13093]]
−
* [[RXN-11832]]
+
** Source: [[orthology-athaliana]]
−
** in-silico_annotation
+
** Source: [[orthology-esiliculosus]]
−
***ec-number
+
* Gene: [[Tiso_gene_13092]]
−
** experimental_annotation
+
** Source: [[annotation-experimental_annotation]]
−
***ec-number
+
*** Assignment: AUTOMATED-NAME-MATCH
−
* [[RXN-12002]]
+
== Pathways  ==
−
** in-silico_annotation
+
* [[GDPRHAMSYN-PWY]], GDP-D-rhamnose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=GDPRHAMSYN-PWY GDPRHAMSYN-PWY]
−
***ec-number
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
** experimental_annotation
+
* [[PWY-66]], GDP-L-fucose biosynthesis I (from GDP-D-mannose): [http://metacyc.org/META/NEW-IMAGE?object=PWY-66 PWY-66]
−
***ec-number
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
** [[pantograph]]-[[creinhardtii]]
+
* [[PWY-5740]], GDP-L-colitose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5740 PWY-5740]
−
* [[RXN-7913]]
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
** in-silico_annotation
+
* [[PWY-7573]], GDP-mycosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7573 PWY-7573]
−
***ec-number
+
** '''1''' reactions found over '''3''' reactions in the full pathway
−
** experimental_annotation
+
* [[PWY-5738]], GDP-6-deoxy-D-talose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5738 PWY-5738]
−
***ec-number
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[UMPKf]]
+
* [[PWY-5739]], GDP-D-perosamine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5739 PWY-5739]
−
** [[pantograph]]-[[creinhardtii]]
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
== Pathways associated ==
+
== Reconstruction information  ==
−
* [[PWY-7205]]
+
* Category: [[orthology]]
−
* [[PWY-7197]]
+
** Source: [[orthology-athaliana]]
−
* [[PWY-7176]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
{{#set: left end position=3701}}
+
* RHEA:
−
{{#set: transcription direction=POSITIVE}}
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23820 23820]
−
{{#set: right end position=5342}}
+
* LIGAND-RXN:
−
{{#set: centisome position=33.33934    }}
+
** [http://www.genome.jp/dbget-bin/www_bget?R00888 R00888]
−
{{#set: reaction associated=ATCM|ATCMf|ATDCM|ATDCMf|RXN-11832|RXN-12002|RXN-7913|UMPKf}}
+
* UNIPROT:
−
{{#set: pathway associated=PWY-7205|PWY-7197|PWY-7176}}
+
** [http://www.uniprot.org/uniprot/Q84439 Q84439]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=GDP-mannose 4,6-dehydratase}}
 +
{{#set: ec number=EC-4.2.1.47}}
 +
{{#set: gene associated=Tiso_gene_13093|Tiso_gene_13092}}
 +
{{#set: in pathway=GDPRHAMSYN-PWY|PWY-66|PWY-5740|PWY-7573|PWY-5738|PWY-5739}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=orthology-athaliana|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:45, 21 March 2018

Reaction GDPMANDEHYDRA-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • GDP-mannose 4,6-dehydratase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • GDPRHAMSYN-PWY, GDP-D-rhamnose biosynthesis: GDPRHAMSYN-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-66, GDP-L-fucose biosynthesis I (from GDP-D-mannose): PWY-66
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5740, GDP-L-colitose biosynthesis: PWY-5740
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7573, GDP-mycosamine biosynthesis: PWY-7573
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5738, GDP-6-deoxy-D-talose biosynthesis: PWY-5738
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5739, GDP-D-perosamine biosynthesis: PWY-5739
    • 1 reactions found over 2 reactions in the full pathway

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_16842&oldid=36100"