Difference between revisions of "Rubisco-trimethylated-lysine"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12460 RXN-12460] == * direction: ** LEFT-TO-RIGHT * common name: ** L-asparaginyl-tRNAasn hydro...")
(Created page with "Category:Gene == Gene Tiso_gene_18748 == * right end position: ** 1984 * transcription direction: ** NEGATIVE * left end position: ** 2 * centisome position: ** 7.09471460...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-12460 RXN-12460] ==
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== Gene Tiso_gene_18748 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 1984
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* common name:
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* transcription direction:
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** L-asparaginyl-tRNAasn hydrolase
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** NEGATIVE
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** peptidyl-trna_hydrolase
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* left end position:
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* ec number:
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** 2
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** [http://enzyme.expasy.org/EC/3.1.1.29 EC-3.1.1.29]
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* centisome position:
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** 7.09471460e-2
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[1.1.1.274-RXN]]
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** 1 [[WATER]][c] '''+''' 1 [[Charged-ASN-tRNAs]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[ASN]][c] '''+''' 1 [[ASN-tRNAs]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 H2O[c] '''+''' 1 an L-asparaginyl-[tRNAasn][c] '''=>''' 1 H+[c] '''+''' 1 L-asparagine[c] '''+''' 1 tRNAasn[c]
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* Reaction: [[ALDEHYDE-REDUCTASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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== Genes associated with this reaction  ==
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*** Assignment: ec-number
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Genes have been associated with this reaction based on different elements listed below.
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* Reaction: [[PYRIDOXINE-4-DEHYDROGENASE-RXN]]
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* [[Tiso_gene_7443]]
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** Source: [[annotation-in-silico_annotation]]
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** IN-SILICO_ANNOTATION
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*** Assignment: ec-number
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***EC-NUMBER
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* Reaction: [[RXN-12078]]
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* [[Tiso_gene_13800]]
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** Source: [[annotation-in-silico_annotation]]
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** EXPERIMENTAL_ANNOTATION
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*** Assignment: ec-number
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***AUTOMATED-NAME-MATCH
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* Reaction: [[RXN-14102]]
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** [[pantograph]]-[[esiliculosus]]
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** Source: [[annotation-in-silico_annotation]]
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* [[Tiso_gene_14300]]
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*** Assignment: ec-number
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** IN-SILICO_ANNOTATION
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* Reaction: [[RXN-1884]]
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY490-4]], L-asparagine biosynthesis III (tRNA-dependent): [http://metacyc.org/META/NEW-IMAGE?object=PWY490-4 PWY490-4]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Reaction: [[RXN-8772]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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* Reaction: [[RXN-8773]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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* [[PWY-6693]]
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* [[PWY-882]]
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* [[PWY-7204]]
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* [[KETOGLUCONMET-PWY]]
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* [[PWY-7282]]
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* [[PWY-7165]]
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* [[PWY-5515]]
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* [[PWY-5516]]
 
== External links  ==
 
== External links  ==
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: right end position=1984}}
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{{#set: common name=L-asparaginyl-tRNAasn hydrolase}}
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{{#set: transcription direction=NEGATIVE}}
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{{#set: common name=peptidyl-trna_hydrolase}}
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{{#set: left end position=2}}
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{{#set: ec number=EC-3.1.1.29}}
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{{#set: centisome position=7.09471460e-2}}
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{{#set: gene associated=Tiso_gene_7443|Tiso_gene_13800|Tiso_gene_14300}}
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{{#set: reaction associated=1.1.1.274-RXN|ALDEHYDE-REDUCTASE-RXN|PYRIDOXINE-4-DEHYDROGENASE-RXN|RXN-12078|RXN-14102|RXN-1884|RXN-8772|RXN-8773}}
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{{#set: in pathway=PWY490-4}}
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{{#set: pathway associated=PWY-6693|PWY-882|PWY-7204|KETOGLUCONMET-PWY|PWY-7282|PWY-7165|PWY-5515|PWY-5516}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:47, 21 March 2018

Gene Tiso_gene_18748

  • right end position:
    • 1984
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 2
  • centisome position:
    • 7.09471460e-2
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Rubisco-trimethylated-lysine&oldid=36310"