Difference between revisions of "GDP-TP"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERILEU-RXN BRANCHED-CHAINAMINOTRANSFERILEU-RXN] == * direction: ** REVERSI...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6524 RXN0-6524] == * direction: ** LEFT-TO-RIGHT * common name: ** exosome_complex_exonuclease...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=BRANCHED-CHAINAMINOTRANSFERILEU-RXN BRANCHED-CHAINAMINOTRANSFERILEU-RXN] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6524 RXN0-6524] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
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** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** branched-chain_amino_acid_aminotransferase
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** exosome_complex_exonuclease
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.6.1.42 EC-2.6.1.42]
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** [http://enzyme.expasy.org/EC/3.1.13.1 EC-3.1.13.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ILE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[2-KETO-3-METHYL-VALERATE]][c]
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** n [[WATER]][c] '''+''' 1 [[RNASE-II-POLY-A-SUBSTRATE-MRNA]][c] '''=>''' n [[AMP]][c] '''+''' 1 [[RNASE-II-SUBSTRATE-WITH-NO-POLY-A-TAIL]][c]
 
* With common name(s):
 
* With common name(s):
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** 1 L-isoleucine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 (S)-3-methyl-2-oxopentanoate[c]
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** n H2O[c] '''+''' 1 RNase II poly-A substrate mRNA[c] '''=>''' n AMP[c] '''+''' 1 RNase II substrate with no poly-A tail[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_14984]]
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* Gene: [[Tiso_gene_11612]]
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** IN-SILICO_ANNOTATION
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** Source: [[annotation-in-silico_annotation]]
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***EC-NUMBER
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*** Assignment: EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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* Gene: [[Tiso_gene_11613]]
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***EC-NUMBER
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** Source: [[annotation-in-silico_annotation]]
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** [[pantograph]]-[[athaliana]]
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*** Assignment: EC-NUMBER
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** [[pantograph]]-[[synechocystis]]
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−
** [[pantograph]]-[[esiliculosus]]
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−
** [[pantograph]]-[[creinhardtii]]
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−
* [[Tiso_gene_18403]]
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−
** [[pantograph]]-[[synechocystis]]
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−
* [[Tiso_gene_17748]]
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−
** [[pantograph]]-[[athaliana]]
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−
** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
 
== Pathways  ==
−
* [[ILEUSYN-PWY]], L-isoleucine biosynthesis I (from threonine): [http://metacyc.org/META/NEW-IMAGE?object=ILEUSYN-PWY ILEUSYN-PWY]
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[ILEUDEG-PWY]], L-isoleucine degradation I: [http://metacyc.org/META/NEW-IMAGE?object=ILEUDEG-PWY ILEUDEG-PWY]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5108]], L-isoleucine biosynthesis V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5108 PWY-5108]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5103]], L-isoleucine biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5103 PWY-5103]
 
−
** '''4''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5101]], L-isoleucine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5101 PWY-5101]
 
−
** '''5''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5078]], L-isoleucine degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5078 PWY-5078]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5104]], L-isoleucine biosynthesis IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5104 PWY-5104]
 
−
** '''3''' reactions found over '''6''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
 
−
*** Tool: [[pathwaytools]]
 
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24801 24801]
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{{#set: common name=exosome_complex_exonuclease}}
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* LIGAND-RXN:
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{{#set: ec number=EC-3.1.13.1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02199 R02199]
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{{#set: gene associated=Tiso_gene_11612|Tiso_gene_11613}}
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* UNIPROT:
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{{#set: in pathway=}}
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** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
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{{#set: reconstruction category=annotation}}
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** [http://www.uniprot.org/uniprot/P38891 P38891]
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{{#set: reconstruction source=annotation-in-silico_annotation}}
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** [http://www.uniprot.org/uniprot/P47176 P47176]
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{{#set: reconstruction tool=pathwaytools}}
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** [http://www.uniprot.org/uniprot/O86505 O86505]
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−
** [http://www.uniprot.org/uniprot/O14370 O14370]
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−
** [http://www.uniprot.org/uniprot/O32954 O32954]
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−
** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
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−
{{#set: direction=REVERSIBLE}}
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−
{{#set: common name=branched-chain_amino_acid_aminotransferase}}
+
−
{{#set: ec number=EC-2.6.1.42}}
+
−
{{#set: gene associated=Tiso_gene_14984|Tiso_gene_18403|Tiso_gene_17748}}
+
−
{{#set: in pathway=ILEUSYN-PWY|ILEUDEG-PWY|PWY-5108|PWY-5103|PWY-5101|PWY-5078|PWY-5104}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 15:48, 21 March 2018

Reaction RXN0-6524

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • exosome_complex_exonuclease
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=GDP-TP&oldid=36419"