Difference between revisions of "RXN-12750"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN] == * direction: ** LEFT-TO-RIGHT...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHEAMINOTRANS-RXN PHEAMINOTRANS-RXN] == * direction: ** REVERSIBLE * ec number: ** [http://enzyme.e...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-HYDROXYDECANOYL-ACP-DEHYDR-RXN 3-HYDROXYDECANOYL-ACP-DEHYDR-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PHEAMINOTRANS-RXN PHEAMINOTRANS-RXN] ==
 
* direction:
 
* direction:
−
** LEFT-TO-RIGHT
+
** REVERSIBLE
−
* common name:
+
−
** polyketide_synthase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
** [http://enzyme.expasy.org/EC/2.6.1.57 EC-2.6.1.57]
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
−
** [http://enzyme.expasy.org/EC/4.2.1.59 EC-4.2.1.59]
+
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[OH-ACYL-ACP]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[TRANS-D2-ENOYL-ACP]][c]
+
** 1 [[GLT]][c] '''+''' 1 [[PHENYL-PYRUVATE]][c] '''<=>''' 1 [[PHE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a (3R)-3-hydroxyacyl-[acyl-carrier protein][c] '''=>''' 1 H2O[c] '''+''' 1 a trans-2-enoyl-[acyl-carrier protein][c]
+
** 1 L-glutamate[c] '''+''' 1 2-oxo-3-phenylpropanoate[c] '''<=>''' 1 L-phenylalanine[c] '''+''' 1 2-oxoglutarate[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_6884]]
+
* Gene: [[Tiso_gene_13892]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***AUTOMATED-NAME-MATCH
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** Source: [[orthology-esiliculosus]]
−
* [[Tiso_gene_13394]]
+
* Gene: [[Tiso_gene_10680]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
** Source: [[orthology-synechocystis]]
−
* [[Tiso_gene_500]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***EC-NUMBER
+
** Source: [[orthology-creinhardtii]]
−
* [[Tiso_gene_135]]
+
** Source: [[orthology-creinhardtii]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_15680]]
−
***EC-NUMBER
+
** Source: [[orthology-athaliana]]
−
* [[Tiso_gene_136]]
+
** Source: [[orthology-esiliculosus]]
−
** IN-SILICO_ANNOTATION
+
* Gene: [[Tiso_gene_17809]]
−
***EC-NUMBER
+
** Source: [[orthology-athaliana]]
−
* [[Tiso_gene_10876]]
+
* Gene: [[Tiso_gene_17718]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-athaliana]]
−
***EC-NUMBER
+
** Source: [[orthology-esiliculosus]]
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_13538]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_6815]]
 +
** Source: [[orthology-athaliana]]
 +
** Source: [[orthology-synechocystis]]
 +
** Source: [[orthology-creinhardtii]]
 +
** Source: [[orthology-creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[FASYN-ELONG-PWY]], fatty acid elongation -- saturated: [http://metacyc.org/META/NEW-IMAGE?object=FASYN-ELONG-PWY FASYN-ELONG-PWY]
+
* [[ANAPHENOXI-PWY]], L-phenylalanine degradation II (anaerobic): [http://metacyc.org/META/NEW-IMAGE?object=ANAPHENOXI-PWY ANAPHENOXI-PWY]
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7432]], L-phenylalanine biosynthesis III (cytosolic, plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7432 PWY-7432]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5079]], L-phenylalanine degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5079 PWY-5079]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PHESYN]], L-phenylalanine biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PHESYN PHESYN]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[annotation]]
+
* Category: [[orthology]]
−
** Source: [[annotation-experimental_annotation]]
+
** Source: [[orthology-athaliana]]
−
*** Tool: [[pathwaytools]]
+
*** Tool: [[pantograph]]
−
** Source: [[annotation-in-silico_annotation]]
+
** Source: [[orthology-creinhardtii]]
−
*** Tool: [[pathwaytools]]
+
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25152 25152]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R10208 R10208]
+
** [http://www.genome.jp/dbget-bin/www_bget?R00694 R00694]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P0A6Q3 P0A6Q3]
+
** [http://www.uniprot.org/uniprot/O84642 O84642]
−
** [http://www.uniprot.org/uniprot/P45159 P45159]
+
** [http://www.uniprot.org/uniprot/Q02636 Q02636]
−
{{#set: direction=LEFT-TO-RIGHT}}
+
** [http://www.uniprot.org/uniprot/Q9Z7G5 Q9Z7G5]
−
{{#set: common name=polyketide_synthase}}
+
** [http://www.uniprot.org/uniprot/Q9V0L2 Q9V0L2]
−
{{#set: ec number=EC-2.3.1.86}}
+
** [http://www.uniprot.org/uniprot/Q9PHA8 Q9PHA8]
−
{{#set: ec number=EC-2.3.1.85}}
+
** [http://www.uniprot.org/uniprot/O59096 O59096]
−
{{#set: ec number=EC-4.2.1.59}}
+
** [http://www.uniprot.org/uniprot/O58489 O58489]
−
{{#set: gene associated=Tiso_gene_6884|Tiso_gene_13394|Tiso_gene_500|Tiso_gene_135|Tiso_gene_136|Tiso_gene_10876}}
+
** [http://www.uniprot.org/uniprot/Q9UZ63 Q9UZ63]
−
{{#set: in pathway=FASYN-ELONG-PWY}}
+
** [http://www.uniprot.org/uniprot/Q9JT83 Q9JT83]
−
{{#set: reconstruction category=annotation}}
+
** [http://www.uniprot.org/uniprot/Q9JYA1 Q9JYA1]
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
+
** [http://www.uniprot.org/uniprot/P95468 P95468]
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.uniprot.org/uniprot/Q9UWK9 Q9UWK9]
 +
** [http://www.uniprot.org/uniprot/Q9UWK8 Q9UWK8]
 +
** [http://www.uniprot.org/uniprot/P74861 P74861]
 +
** [http://www.uniprot.org/uniprot/P04693 P04693]
 +
{{#set: direction=REVERSIBLE}}
 +
{{#set: ec number=EC-2.6.1.57}}
 +
{{#set: gene associated=Tiso_gene_13892|Tiso_gene_10680|Tiso_gene_15680|Tiso_gene_17809|Tiso_gene_17718|Tiso_gene_13538|Tiso_gene_6815}}
 +
{{#set: in pathway=ANAPHENOXI-PWY|PWY-7432|PWY-5079|PHESYN}}
 +
{{#set: reconstruction category=orthology}}
 +
{{#set: reconstruction source=orthology-athaliana|orthology-creinhardtii|orthology-synechocystis|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph}}

Revision as of 16:50, 21 March 2018

Reaction PHEAMINOTRANS-RXN

  • direction:
    • REVERSIBLE
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 L-glutamate[c] + 1 2-oxo-3-phenylpropanoate[c] <=> 1 L-phenylalanine[c] + 1 2-oxoglutarate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • ANAPHENOXI-PWY, L-phenylalanine degradation II (anaerobic): ANAPHENOXI-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7432, L-phenylalanine biosynthesis III (cytosolic, plants): PWY-7432
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5079, L-phenylalanine degradation III: PWY-5079
    • 2 reactions found over 4 reactions in the full pathway
  • PHESYN, L-phenylalanine biosynthesis I: PHESYN
    • 3 reactions found over 3 reactions in the full pathway

Reconstruction information

External links




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-12750&oldid=36640"