Difference between revisions of "RXN0-5021"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7609 RXN-7609] == * direction: ** LEFT-TO-RIGHT * common name: ** 5_deoxy_cytosolic_type_c_prot...")
(Created page with "Category:Gene == Gene Tiso_gene_18603 == * right end position: ** 2318 * transcription direction: ** POSITIVE * left end position: ** 34 * centisome position: ** 1.1663808...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-7609 RXN-7609] ==
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== Gene Tiso_gene_18603 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 2318
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* common name:
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* transcription direction:
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** 5_deoxy_cytosolic_type_c_protein
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** POSITIVE
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** 5_-nucleotidase
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* left end position:
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** probable_cytosolic_imp-gmp_specific_5_-nucleotidase
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** 34
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** ORF
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* centisome position:
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* ec number:
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** 1.1663808   
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** [http://enzyme.expasy.org/EC/3.1.3.5 EC-3.1.3.5]
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* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
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** 1 [[GMP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[Pi]][c] '''+''' 1 [[GUANOSINE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 GMP[c] '''+''' 1 H2O[c] '''=>''' 1 phosphate[c] '''+''' 1 guanosine[c]
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** Source: [[annotation-experimental_annotation]]
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*** Assignment: ec-number
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== Genes associated with this reaction  ==
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** Source: [[orthology-athaliana]]
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Genes have been associated with this reaction based on different elements listed below.
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** Source: [[orthology-synechocystis]]
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* [[Tiso_gene_14435]]
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** Source: [[orthology-esiliculosus]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_5911]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_13929]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_6640]]
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_14246]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_14434]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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* [[Tiso_gene_6988]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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** [[pantograph]]-[[creinhardtii]]
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* [[Tiso_gene_9166]]
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** [[pantograph]]-[[creinhardtii]]
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== Pathways  ==
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* [[PWY-6608]], guanosine nucleotides degradation III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6608 PWY-6608]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6607]], guanosine nucleotides degradation I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6607 PWY-6607]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6606]], guanosine nucleotides degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6606 PWY-6606]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-creinhardtii]]
 
** Source: [[orthology-creinhardtii]]
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*** Tool: [[pantograph]]
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== Pathways associated ==
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** Source: [[orthology-esiliculosus]]
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* [[HOMOSERSYN-PWY]]
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*** Tool: [[pantograph]]
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* [[PWY-7153]]
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* Category: [[annotation]]
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* [[DAPLYSINESYN-PWY]]
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** Source: [[annotation-in-silico_annotation]]
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* [[PWY-2942]]
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*** Tool: [[pathwaytools]]
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* [[PWY-2941]]
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* [[PWY-6559]]
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* [[PWY-5097]]
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* [[PWY-6562]]
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* [[P101-PWY]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=2318}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27714 27714]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=34}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01227 R01227]
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{{#set: centisome position=1.1663808    }}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: reaction associated=ASPARTATE-SEMIALDEHYDE-DEHYDROGENASE-RXN}}
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{{#set: common name=5_deoxy_cytosolic_type_c_protein}}
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{{#set: pathway associated=HOMOSERSYN-PWY|PWY-7153|DAPLYSINESYN-PWY|PWY-2942|PWY-2941|PWY-6559|PWY-5097|PWY-6562|P101-PWY}}
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{{#set: common name=5_-nucleotidase}}
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{{#set: common name=probable_cytosolic_imp-gmp_specific_5_-nucleotidase}}
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{{#set: common name=ORF}}
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{{#set: ec number=EC-3.1.3.5}}
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{{#set: gene associated=Tiso_gene_14435|Tiso_gene_5911|Tiso_gene_13929|Tiso_gene_6640|Tiso_gene_14246|Tiso_gene_14434|Tiso_gene_6988|Tiso_gene_9166}}
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{{#set: in pathway=PWY-6608|PWY-6607|PWY-6606}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|orthology-creinhardtii|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 15:51, 21 March 2018

Gene Tiso_gene_18603

  • right end position:
    • 2318
  • transcription direction:
    • POSITIVE
  • left end position:
    • 34
  • centisome position:
    • 1.1663808
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN0-5021&oldid=36756"