Difference between revisions of "RX"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=5-P-BETA-D-RIBOSYL-AMINE 5-P-BETA-D-RIBOSYL-AMINE] == * smiles: ** C(OP([O-])(=O)[O-])C1(C(O)C(...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINSYNDEAM-RXN RIBOFLAVINSYNDEAM-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** rib...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=5-P-BETA-D-RIBOSYL-AMINE 5-P-BETA-D-RIBOSYL-AMINE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RIBOFLAVINSYNDEAM-RXN RIBOFLAVINSYNDEAM-RXN] ==
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* smiles:
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* direction:
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** C(OP([O-])(=O)[O-])C1(C(O)C(O)C([N+])O1)
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** LEFT-TO-RIGHT
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* inchi key:
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** InChIKey=SKCBPEVYGOQGJN-TXICZTDVSA-M
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* common name:
 
* common name:
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** 5-phospho-β-D-ribosylamine
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** riboflavin_biosynthesis_protein
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* molecular weight:
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* ec number:
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** 228.118   
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** [http://enzyme.expasy.org/EC/3.5.4.26 EC-3.5.4.26]
 
* Synonym(s):
 
* Synonym(s):
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** 5-P-β-D-ribosylamine
 
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** PRA
 
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** 5-phosphoribosylamine
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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* [[GLYRIBONUCSYN-RXN]]
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[WATER]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[DIAMINO-OH-PHOSPHORIBOSYLAMINO-PYR]][c] '''=>''' 1 [[AMMONIUM]][c] '''+''' 1 [[CPD-602]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[PRPPAMIDOTRANS-RXN]]
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** 1 H2O[c] '''+''' 1 H+[c] '''+''' 1 2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one[c] '''=>''' 1 ammonium[c] '''+''' 1 5-amino-6-(5-phospho-D-ribosylamino)uracil[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_1389]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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** Source: [[orthology-esiliculosus]]
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== Pathways  ==
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* [[RIBOSYN2-PWY]], flavin biosynthesis I (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=RIBOSYN2-PWY RIBOSYN2-PWY]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* BIGG : pram
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* RHEA:
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* PUBCHEM:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21868 21868]
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=45266724 45266724]
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* LIGAND-RXN:
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* HMDB : HMDB01128
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** [http://www.genome.jp/dbget-bin/www_bget?R03459 R03459]
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* LIGAND-CPD:
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{{#set: direction=LEFT-TO-RIGHT}}
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** [http://www.genome.jp/dbget-bin/www_bget?C03090 C03090]
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{{#set: common name=riboflavin_biosynthesis_protein}}
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* CHEBI:
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{{#set: ec number=EC-3.5.4.26}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=58681 58681]
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{{#set: gene associated=Tiso_gene_1389}}
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* METABOLIGHTS : MTBLC58681
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{{#set: in pathway=RIBOSYN2-PWY}}
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{{#set: smiles=C(OP([O-])(=O)[O-])C1(C(O)C(O)C([N+])O1)}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: inchi key=InChIKey=SKCBPEVYGOQGJN-TXICZTDVSA-M}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
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{{#set: common name=5-phospho-β-D-ribosylamine}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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{{#set: molecular weight=228.118    }}
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{{#set: common name=5-P-β-D-ribosylamine|PRA|5-phosphoribosylamine}}
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{{#set: consumed by=GLYRIBONUCSYN-RXN}}
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{{#set: reversible reaction associated=PRPPAMIDOTRANS-RXN}}
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Revision as of 15:52, 21 March 2018

Reaction RIBOFLAVINSYNDEAM-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • riboflavin_biosynthesis_protein
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • RIBOSYN2-PWY, flavin biosynthesis I (bacteria and plants): RIBOSYN2-PWY
    • 7 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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