Difference between revisions of "6.3.4.16-RXN"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDROQUINATE-DEHYDRATASE-RXN 3-DEHYDROQUINATE-DEHYDRATASE-RXN] == * direction: ** REVERSIBLE *...")
(Created page with "Category:Gene == Gene Tiso_gene_4415 == * Synonym(s): == Reactions associated == * Reaction: AGMATIN-RXN ** Source: orthology-esiliculosus * Reaction: ARGINASE-...")
Line 1: Line 1:
[[Category:Reaction]]
+
[[Category:Gene]]
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3-DEHYDROQUINATE-DEHYDRATASE-RXN 3-DEHYDROQUINATE-DEHYDRATASE-RXN] ==
+
== Gene Tiso_gene_4415 ==
* direction:
+
** REVERSIBLE
+
* common name:
+
** pentafunctional_protein
+
* ec number:
+
** [http://enzyme.expasy.org/EC/4.2.1.10 EC-4.2.1.10]
+
 
* Synonym(s):
 
* Synonym(s):
  
== Reaction Formula ==
+
== Reactions associated ==
* With identifiers:
+
* Reaction: [[AGMATIN-RXN]]
** 1 [[DEHYDROQUINATE]][c] '''<=>''' 1 [[WATER]][c] '''+''' 1 [[3-DEHYDRO-SHIKIMATE]][c]
+
** Source: [[orthology-esiliculosus]]
* With common name(s):
+
* Reaction: [[ARGINASE-RXN]]
** 1 3-dehydroquinate[c] '''<=>''' 1 H2O[c] '''+''' 1 3-dehydroshikimate[c]
+
 
+
== Genes associated with this reaction  ==
+
Genes have been associated with this reaction based on different elements listed below.
+
* [[Tiso_gene_5752]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
* [[Tiso_gene_14718]]
+
** [[pantograph]]-[[athaliana]]
+
** [[pantograph]]-[[esiliculosus]]
+
* [[Tiso_gene_8720]]
+
** [[pantograph]]-[[athaliana]]
+
** [[pantograph]]-[[esiliculosus]]
+
* [[Tiso_gene_5753]]
+
** IN-SILICO_ANNOTATION
+
***EC-NUMBER
+
** [[pantograph]]-[[esiliculosus]]
+
* [[Tiso_gene_5619]]
+
** [[pantograph]]-[[esiliculosus]]
+
== Pathways  ==
+
* [[PWY-6707]], gallate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6707 PWY-6707]
+
** '''1''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-6416]], quinate degradation II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6416 PWY-6416]
+
** '''2''' reactions found over '''3''' reactions in the full pathway
+
* [[QUINATEDEG-PWY]], quinate degradation I: [http://metacyc.org/META/NEW-IMAGE?object=QUINATEDEG-PWY QUINATEDEG-PWY]
+
** '''1''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6163 PWY-6163]
+
** '''6''' reactions found over '''6''' reactions in the full pathway
+
== Reconstruction information  ==
+
* Category: [[orthology]]
+
 
** Source: [[orthology-athaliana]]
 
** Source: [[orthology-athaliana]]
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
*** Tool: [[pantograph]]
+
* Reaction: [[GUANIDINOBUTYRASE-RXN]]
* Category: [[manual]]
+
** Source: [[orthology-synechocystis]]
** Source: [[manual-primary_network]]
+
== Pathways associated ==
* Category: [[annotation]]
+
* [[ARGASEDEG-PWY]]
** Source: [[annotation-in-silico_annotation]]
+
* [[PWY0-823]]
*** Tool: [[pathwaytools]]
+
* [[ARGDEG-IV-PWY]]
 +
* [[ARG-PRO-PWY]]
 +
* [[ARG-GLU-PWY]]
 +
* [[ARGDEG-V-PWY]]
 +
* [[PWY-4984]]
 +
* [[PWY-5742]]
 +
* [[PWY-7523]]
 +
* [[PWY-6305]]
 +
* [[PWY-6922]]
 +
* [[PWY-40]]
 +
* [[CITRULBIO-PWY]]
 
== External links  ==
 
== External links  ==
* RHEA:
+
{{#set: reaction associated=AGMATIN-RXN|ARGINASE-RXN|GUANIDINOBUTYRASE-RXN}}
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21096 21096]
+
{{#set: pathway associated=ARGASEDEG-PWY|PWY0-823|ARGDEG-IV-PWY|ARG-PRO-PWY|ARG-GLU-PWY|ARGDEG-V-PWY|PWY-4984|PWY-5742|PWY-7523|PWY-6305|PWY-6922|PWY-40|CITRULBIO-PWY}}
* LIGAND-RXN:
+
** [http://www.genome.jp/dbget-bin/www_bget?R03084 R03084]
+
* UNIPROT:
+
** [http://www.uniprot.org/uniprot/P05195 P05195]
+
** [http://www.uniprot.org/uniprot/P46380 P46380]
+
** [http://www.uniprot.org/uniprot/Q9CF39 Q9CF39]
+
** [http://www.uniprot.org/uniprot/P07547 P07547]
+
** [http://www.uniprot.org/uniprot/P08566 P08566]
+
** [http://www.uniprot.org/uniprot/P43878 P43878]
+
** [http://www.uniprot.org/uniprot/P05194 P05194]
+
** [http://www.uniprot.org/uniprot/Q58849 Q58849]
+
** [http://www.uniprot.org/uniprot/P0A4Z6 P0A4Z6]
+
** [http://www.uniprot.org/uniprot/Q9PJ53 Q9PJ53]
+
** [http://www.uniprot.org/uniprot/P05147 P05147]
+
** [http://www.uniprot.org/uniprot/P24670 P24670]
+
** [http://www.uniprot.org/uniprot/P35146 P35146]
+
** [http://www.uniprot.org/uniprot/Q42947 Q42947]
+
** [http://www.uniprot.org/uniprot/Q48255 Q48255]
+
** [http://www.uniprot.org/uniprot/P73367 P73367]
+
** [http://www.uniprot.org/uniprot/O65917 O65917]
+
{{#set: direction=REVERSIBLE}}
+
{{#set: common name=pentafunctional_protein}}
+
{{#set: ec number=EC-4.2.1.10}}
+
{{#set: gene associated=Tiso_gene_5752|Tiso_gene_14718|Tiso_gene_8720|Tiso_gene_5753|Tiso_gene_5619}}
+
{{#set: in pathway=PWY-6707|PWY-6416|QUINATEDEG-PWY|PWY-6163}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
+
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|manual-primary_network|orthology-esiliculosus}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 15:53, 21 March 2018

Gene Tiso_gene_4415

  • Synonym(s):

Reactions associated

Pathways associated

External links