Difference between revisions of "Tiso gene 1610"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBOXYLESTERASE-RXN CARBOXYLESTERASE-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** alpha...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** 1-deoxy-d-xylulose_5-phosphate_...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=CARBOXYLESTERASE-RXN CARBOXYLESTERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=DXS-RXN DXS-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** alpha_beta_hydrolase_fold_protein
+
** 1-deoxy-d-xylulose_5-phosphate_chloroplast
−
** ORF
+
−
** serine_esterase
+
−
** sialate_o-acetylesterase-like_protein
+
−
** lysophospholipase
+
−
** alpha_beta_hydrolase
+
−
** protein_chloroplastic
+
−
** para-nitrobenzyl_esterase
+
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/3.1.1.1 EC-3.1.1.1]
+
** [http://enzyme.expasy.org/EC/2.2.1.7 EC-2.2.1.7]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[WATER]][c] '''+''' 1 [[Carboxylic-esters]][c] '''=>''' 1 [[Alcohols]][c] '''+''' 1 [[Carboxylates]][c] '''+''' 1 [[PROTON]][c]
+
** 1 [[PROTON]][c] '''+''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[DEOXYXYLULOSE-5P]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 H2O[c] '''+''' 1 a carboxylic ester[c] '''=>''' 1 an alcohol[c] '''+''' 1 a carboxylate[c] '''+''' 1 H+[c]
+
** 1 H+[c] '''+''' 1 D-glyceraldehyde 3-phosphate[c] '''+''' 1 pyruvate[c] '''=>''' 1 1-deoxy-D-xylulose 5-phosphate[c] '''+''' 1 CO2[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_16518]]
+
* Gene: [[Tiso_gene_17311]]
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[annotation-in-silico_annotation]]
−
* [[Tiso_gene_4650]]
+
*** Assignment: EC-NUMBER
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[esiliculosus]]
+
** Source: [[orthology-athaliana]]
−
* [[Tiso_gene_2556]]
+
** Source: [[orthology-synechocystis]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[orthology-esiliculosus]]
−
***EC-NUMBER
+
** Source: [[orthology-creinhardtii]]
−
* [[Tiso_gene_11351]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
* [[Tiso_gene_1537]]
+
−
** IN-SILICO_ANNOTATION
+
−
***AUTOMATED-NAME-MATCH
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_4606]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1922]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_1538]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_17029]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9429]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_10066]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_12686]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_19778]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
 
== Pathways  ==
 
== Pathways  ==
 +
* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I: [http://metacyc.org/META/NEW-IMAGE?object=NONMEVIPP-PWY NONMEVIPP-PWY]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6891]], thiazole biosynthesis II (aerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6891 PWY-6891]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PYRIDOXSYN-PWY PYRIDOXSYN-PWY]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6892]], thiazole biosynthesis I (facultative anaerobic bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6892 PWY-6892]
 +
** '''3''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7560]], methylerythritol phosphate pathway II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7560 PWY-7560]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-synechocystis]]
 +
*** Tool: [[pantograph]]
 
** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
 +
* Category: [[manual]]
 +
** Source: [[manual-primary_network]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* RHEA:
 +
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=12605 12605]
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R00630 R00630]
+
** [http://www.genome.jp/dbget-bin/www_bget?R05636 R05636]
−
* UNIPROT:
+
−
** [http://www.uniprot.org/uniprot/Q7M3Q8 Q7M3Q8]
+
−
** [http://www.uniprot.org/uniprot/P23953 P23953]
+
−
** [http://www.uniprot.org/uniprot/P10094 P10094]
+
−
** [http://www.uniprot.org/uniprot/P12337 P12337]
+
−
** [http://www.uniprot.org/uniprot/P10959 P10959]
+
−
** [http://www.uniprot.org/uniprot/P08171 P08171]
+
−
** [http://www.uniprot.org/uniprot/P22266 P22266]
+
−
** [http://www.uniprot.org/uniprot/P23141 P23141]
+
−
** [http://www.uniprot.org/uniprot/Q64176 Q64176]
+
−
** [http://www.uniprot.org/uniprot/P10095 P10095]
+
−
** [http://www.uniprot.org/uniprot/P18167 P18167]
+
−
** [http://www.uniprot.org/uniprot/P23872 P23872]
+
−
** [http://www.uniprot.org/uniprot/Q9JU37 Q9JU37]
+
−
** [http://www.uniprot.org/uniprot/Q8X5J5 Q8X5J5]
+
−
** [http://www.uniprot.org/uniprot/Q60123 Q60123]
+
−
** [http://www.uniprot.org/uniprot/Q59248 Q59248]
+
−
** [http://www.uniprot.org/uniprot/Q06174 Q06174]
+
−
** [http://www.uniprot.org/uniprot/Q53403 Q53403]
+
−
** [http://www.uniprot.org/uniprot/Q63108 Q63108]
+
−
** [http://www.uniprot.org/uniprot/O00748 O00748]
+
−
** [http://www.uniprot.org/uniprot/Q05487 Q05487]
+
−
** [http://www.uniprot.org/uniprot/Q53547 Q53547]
+
−
** [http://www.uniprot.org/uniprot/Q7M529 Q7M529]
+
−
** [http://www.uniprot.org/uniprot/Q7M2Q1 Q7M2Q1]
+
−
** [http://www.uniprot.org/uniprot/P21370 P21370]
+
−
** [http://www.uniprot.org/uniprot/Q29550 Q29550]
+
−
** [http://www.uniprot.org/uniprot/Q63880 Q63880]
+
−
** [http://www.uniprot.org/uniprot/Q9Z3U8 Q9Z3U8]
+
−
** [http://www.uniprot.org/uniprot/P35501 P35501]
+
−
** [http://www.uniprot.org/uniprot/P35502 P35502]
+
−
** [http://www.uniprot.org/uniprot/Q7M0L6 Q7M0L6]
+
−
** [http://www.uniprot.org/uniprot/Q64419 Q64419]
+
−
** [http://www.uniprot.org/uniprot/Q92149 Q92149]
+
−
** [http://www.uniprot.org/uniprot/Q23734 Q23734]
+
−
** [http://www.uniprot.org/uniprot/Q23735 Q23735]
+
−
** [http://www.uniprot.org/uniprot/Q23736 Q23736]
+
−
** [http://www.uniprot.org/uniprot/Q27614 Q27614]
+
−
** [http://www.uniprot.org/uniprot/P25726 P25726]
+
−
** [http://www.uniprot.org/uniprot/Q27627 Q27627]
+
−
** [http://www.uniprot.org/uniprot/Q27616 Q27616]
+
−
** [http://www.uniprot.org/uniprot/Q64573 Q64573]
+
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=alpha_beta_hydrolase_fold_protein}}
+
{{#set: common name=1-deoxy-d-xylulose_5-phosphate_chloroplast}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-2.2.1.7}}
−
{{#set: common name=serine_esterase}}
+
{{#set: gene associated=Tiso_gene_17311}}
−
{{#set: common name=sialate_o-acetylesterase-like_protein}}
+
{{#set: in pathway=NONMEVIPP-PWY|PWY-6891|PYRIDOXSYN-PWY|PWY-6892|PWY-7560}}
−
{{#set: common name=lysophospholipase}}
+
{{#set: reconstruction category=orthology|manual|annotation}}
−
{{#set: common name=alpha_beta_hydrolase}}
+
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
−
{{#set: common name=protein_chloroplastic}}
+
−
{{#set: common name=para-nitrobenzyl_esterase}}
+
−
{{#set: ec number=EC-3.1.1.1}}
+
−
{{#set: gene associated=Tiso_gene_16518|Tiso_gene_4650|Tiso_gene_2556|Tiso_gene_11351|Tiso_gene_1537|Tiso_gene_4606|Tiso_gene_1922|Tiso_gene_1538|Tiso_gene_17029|Tiso_gene_9429|Tiso_gene_10066|Tiso_gene_12686|Tiso_gene_19778}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
+
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:54, 21 March 2018

Reaction DXS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • 1-deoxy-d-xylulose_5-phosphate_chloroplast
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H+[c] + 1 D-glyceraldehyde 3-phosphate[c] + 1 pyruvate[c] => 1 1-deoxy-D-xylulose 5-phosphate[c] + 1 CO2[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • NONMEVIPP-PWY, methylerythritol phosphate pathway I: NONMEVIPP-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6891, thiazole biosynthesis II (aerobic bacteria): PWY-6891
    • 2 reactions found over 7 reactions in the full pathway
  • PYRIDOXSYN-PWY, pyridoxal 5'-phosphate biosynthesis I: PYRIDOXSYN-PWY
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-6892, thiazole biosynthesis I (facultative anaerobic bacteria): PWY-6892
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-7560, methylerythritol phosphate pathway II: PWY-7560
    • 9 reactions found over 9 reactions in the full pathway

Reconstruction information

External links





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