Difference between revisions of "Tiso gene 20054"

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(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=THYMIDINE THYMIDINE] == * smiles: ** CC1(=CN(C(=O)NC(=O)1)C2(CC(O)C(CO)O2)) * inchi key: ** InC...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROPRIBTRANS-RXN OROPRIBTRANS-RXN] == * direction: ** REVERSIBLE * common name: ** orotate_phosphor...")
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[[Category:Metabolite]]
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[[Category:Reaction]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=THYMIDINE THYMIDINE] ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=OROPRIBTRANS-RXN OROPRIBTRANS-RXN] ==
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* smiles:
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* direction:
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** CC1(=CN(C(=O)NC(=O)1)C2(CC(O)C(CO)O2))
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** REVERSIBLE
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* inchi key:
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−
** InChIKey=IQFYYKKMVGJFEH-XLPZGREQSA-N
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* common name:
 
* common name:
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** thymidine
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** orotate_phosphoribosyltransferase
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* molecular weight:
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** trna_(cytosine_-c_)-methyltransferase
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** 242.231   
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* ec number:
 +
** [http://enzyme.expasy.org/EC/2.4.2.10 EC-2.4.2.10]
 
* Synonym(s):
 
* Synonym(s):
−
** deoxythymidine
 
  
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== Reaction(s) known to consume the compound ==
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== Reaction Formula ==
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== Reaction(s) known to produce the compound ==
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* With identifiers:
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* [[TPH]]
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** 1 [[PPI]][c] '''+''' 1 [[OROTIDINE-5-PHOSPHATE]][c] '''<=>''' 1 [[OROTATE]][c] '''+''' 1 [[PRPP]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[THYM-PHOSPH-RXN]]
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** 1 diphosphate[c] '''+''' 1 orotidine 5'-phosphate[c] '''<=>''' 1 orotate[c] '''+''' 1 5-phospho-&alpha;-D-ribose 1-diphosphate[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_11163]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
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* Gene: [[Tiso_gene_18647]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-athaliana]]
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** Source: [[orthology-synechocystis]]
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* Gene: [[Tiso_gene_11164]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[PWY-7790]], UMP biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7790 PWY-7790]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7791]], UMP biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7791 PWY-7791]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5686]], UMP biosynthesis I: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5686 PWY-5686]
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** '''6''' reactions found over '''6''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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* CAS : 50-89-5
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* RHEA:
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* METABOLIGHTS : MTBLC17748
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10380 10380]
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* PUBCHEM:
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* LIGAND-RXN:
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=5789 5789]
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** [http://www.genome.jp/dbget-bin/www_bget?R01870 R01870]
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* HMDB : HMDB00273
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* UNIPROT:
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* LIGAND-CPD:
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** [http://www.uniprot.org/uniprot/P08309 P08309]
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** [http://www.genome.jp/dbget-bin/www_bget?C00214 C00214]
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** [http://www.uniprot.org/uniprot/P11172 P11172]
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* CHEMSPIDER:
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** [http://www.uniprot.org/uniprot/P18132 P18132]
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** [http://www.chemspider.com/Chemical-Structure.1102.html 1102]
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** [http://www.uniprot.org/uniprot/P77889 P77889]
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* CHEBI:
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** [http://www.uniprot.org/uniprot/P0A5U0 P0A5U0]
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=17748 17748]
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** [http://www.uniprot.org/uniprot/Q9PIR1 Q9PIR1]
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* BIGG : thymd
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** [http://www.uniprot.org/uniprot/O67742 O67742]
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{{#set: smiles=CC1(=CN(C(=O)NC(=O)1)C2(CC(O)C(CO)O2))}}
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** [http://www.uniprot.org/uniprot/O58855 O58855]
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{{#set: inchi key=InChIKey=IQFYYKKMVGJFEH-XLPZGREQSA-N}}
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** [http://www.uniprot.org/uniprot/Q9Z7U6 Q9Z7U6]
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{{#set: common name=thymidine}}
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** [http://www.uniprot.org/uniprot/Q9Y9D8 Q9Y9D8]
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{{#set: molecular weight=242.231    }}
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** [http://www.uniprot.org/uniprot/P56814 P56814]
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{{#set: common name=deoxythymidine}}
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** [http://www.uniprot.org/uniprot/Q58509 Q58509]
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{{#set: produced by=TPH}}
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** [http://www.uniprot.org/uniprot/O28533 O28533]
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{{#set: reversible reaction associated=THYM-PHOSPH-RXN}}
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** [http://www.uniprot.org/uniprot/Q9CGM8 Q9CGM8]
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** [http://www.uniprot.org/uniprot/P25972 P25972]
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** [http://www.uniprot.org/uniprot/O27888 O27888]
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** [http://www.uniprot.org/uniprot/P65915 P65915]
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** [http://www.uniprot.org/uniprot/P46534 P46534]
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** [http://www.uniprot.org/uniprot/P43855 P43855]
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** [http://www.uniprot.org/uniprot/P31754 P31754]
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** [http://www.uniprot.org/uniprot/P18904 P18904]
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** [http://www.uniprot.org/uniprot/Q01637 Q01637]
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** [http://www.uniprot.org/uniprot/P09556 P09556]
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** [http://www.uniprot.org/uniprot/P21846 P21846]
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** [http://www.uniprot.org/uniprot/P35788 P35788]
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** [http://www.uniprot.org/uniprot/P08870 P08870]
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** [http://www.uniprot.org/uniprot/Q18516 Q18516]
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** [http://www.uniprot.org/uniprot/Q45918 Q45918]
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** [http://www.uniprot.org/uniprot/Q42586 Q42586]
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** [http://www.uniprot.org/uniprot/P41923 P41923]
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** [http://www.uniprot.org/uniprot/Q55574 Q55574]
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** [http://www.uniprot.org/uniprot/Q42942 Q42942]
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** [http://www.uniprot.org/uniprot/O76139 O76139]
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** [http://www.uniprot.org/uniprot/O61790 O61790]
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** [http://www.uniprot.org/uniprot/Q9X8R7 Q9X8R7]
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** [http://www.uniprot.org/uniprot/O94331 O94331]
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** [http://www.uniprot.org/uniprot/P30402 P30402]
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** [http://www.uniprot.org/uniprot/P13298 P13298]
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** [http://www.uniprot.org/uniprot/P0A7E3 P0A7E3]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=orotate_phosphoribosyltransferase}}
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{{#set: common name=trna_(cytosine_-c_)-methyltransferase}}
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{{#set: ec number=EC-2.4.2.10}}
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{{#set: gene associated=Tiso_gene_11163|Tiso_gene_18647|Tiso_gene_11164}}
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{{#set: in pathway=PWY-7790|PWY-7791|PWY-5686}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=manual-primary_network|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 15:55, 21 March 2018

Reaction OROPRIBTRANS-RXN

  • direction:
    • REVERSIBLE
  • common name:
    • orotate_phosphoribosyltransferase
    • trna_(cytosine_-c_)-methyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 diphosphate[c] + 1 orotidine 5'-phosphate[c] <=> 1 orotate[c] + 1 5-phospho-α-D-ribose 1-diphosphate[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-7790, UMP biosynthesis II: PWY-7790
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7791, UMP biosynthesis III: PWY-7791
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5686, UMP biosynthesis I: PWY-5686
    • 6 reactions found over 6 reactions in the full pathway

Reconstruction information

External links





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