Difference between revisions of "CARBON-DIOXIDE"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PRENAL PRENAL] == * smiles: ** CC(=CC=O)C * inchi key: ** InChIKey=SEPQTYODOKLVSB-UHFFFAOYSA-N...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREONINE--TRNA-LIGASE-RXN THREONINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common na...")
Line 1: Line 1:
−
[[Category:Metabolite]]
+
[[Category:Reaction]]
−
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=PRENAL PRENAL] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=THREONINE--TRNA-LIGASE-RXN THREONINE--TRNA-LIGASE-RXN] ==
−
* smiles:
+
* direction:
−
** CC(=CC=O)C
+
** LEFT-TO-RIGHT
−
* inchi key:
+
−
** InChIKey=SEPQTYODOKLVSB-UHFFFAOYSA-N
+
 
* common name:
 
* common name:
−
** 3-methyl-2-butenal
+
** ORF
−
* molecular weight:
+
** threonine--trna_ligase
−
** 84.118   
+
* ec number:
 +
** [http://enzyme.expasy.org/EC/6.1.1.3 EC-6.1.1.3]
 
* Synonym(s):
 
* Synonym(s):
−
** 3-methylbut-2-enal
 
−
** 3,3-dimethyl-acrylaldehyde
 
−
** prenal
 
−
** 3-methylcrotonaldehyde
 
  
−
== Reaction(s) known to consume the compound ==
+
== Reaction Formula ==
−
== Reaction(s) known to produce the compound ==
+
* With identifiers:
−
* [[1.8.3.5-RXN]]
+
** 1 [[ATP]][c] '''+''' 1 [[THR]][c] '''+''' 1 [[THR-tRNAs]][c] '''=>''' 1 [[Charged-THR-tRNAs]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[AMP]][c]
−
* [[RXN-11989]]
+
* With common name(s):
−
== Reaction(s) of unknown directionality ==
+
** 1 ATP[c] '''+''' 1 L-threonine[c] '''+''' 1 a tRNAthr[c] '''=>''' 1 an L-threonyl-[tRNAthr][c] '''+''' 1 diphosphate[c] '''+''' 1 AMP[c]
 +
 
 +
== Genes associated with this reaction  ==
 +
Genes have been associated with this reaction based on different elements listed below.
 +
* Gene: [[Tiso_gene_13142]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[orthology-esiliculosus]]
 +
* Gene: [[Tiso_gene_4406]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: EC-NUMBER
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Assignment: EC-NUMBER
 +
== Pathways  ==
 +
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
 +
** '''21''' reactions found over '''21''' reactions in the full pathway
 +
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-esiliculosus]]
 +
*** Tool: [[pantograph]]
 +
* Category: [[annotation]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Tool: [[pathwaytools]]
 +
** Source: [[annotation-experimental_annotation]]
 +
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* PUBCHEM:
+
* RHEA:
−
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=61020 61020]
+
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24624 24624]
−
* HMDB : HMDB12157
+
* LIGAND-RXN:
−
* LIGAND-CPD:
+
** [http://www.genome.jp/dbget-bin/www_bget?R03663 R03663]
−
** [http://www.genome.jp/dbget-bin/www_bget?C07330 C07330]
+
* UNIPROT:
−
* CHEMSPIDER:
+
** [http://www.uniprot.org/uniprot/O83809 O83809]
−
** [http://www.chemspider.com/Chemical-Structure.10820046.html 10820046]
+
** [http://www.uniprot.org/uniprot/Q9JVA3 Q9JVA3]
−
* CHEBI:
+
** [http://www.uniprot.org/uniprot/P56071 P56071]
−
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=15825 15825]
+
** [http://www.uniprot.org/uniprot/O58430 O58430]
−
* METABOLIGHTS : MTBLC15825
+
** [http://www.uniprot.org/uniprot/P47615 P47615]
−
{{#set: smiles=CC(=CC=O)C}}
+
** [http://www.uniprot.org/uniprot/O05947 O05947]
−
{{#set: inchi key=InChIKey=SEPQTYODOKLVSB-UHFFFAOYSA-N}}
+
** [http://www.uniprot.org/uniprot/Q9PIS3 Q9PIS3]
−
{{#set: common name=3-methyl-2-butenal}}
+
** [http://www.uniprot.org/uniprot/O67583 O67583]
−
{{#set: molecular weight=84.118    }}
+
** [http://www.uniprot.org/uniprot/O27504 O27504]
−
{{#set: common name=3-methylbut-2-enal|3,3-dimethyl-acrylaldehyde|prenal|3-methylcrotonaldehyde}}
+
** [http://www.uniprot.org/uniprot/O51662 O51662]
−
{{#set: produced by=1.8.3.5-RXN|RXN-11989}}
+
** [http://www.uniprot.org/uniprot/Q9ZMV3 Q9ZMV3]
 +
** [http://www.uniprot.org/uniprot/Q9Z7A0 Q9Z7A0]
 +
** [http://www.uniprot.org/uniprot/Q9WZJ9 Q9WZJ9]
 +
** [http://www.uniprot.org/uniprot/Q9CED2 Q9CED2]
 +
** [http://www.uniprot.org/uniprot/P43014 P43014]
 +
** [http://www.uniprot.org/uniprot/P46244 P46244]
 +
** [http://www.uniprot.org/uniprot/P75225 P75225]
 +
** [http://www.uniprot.org/uniprot/Q48989 Q48989]
 +
** [http://www.uniprot.org/uniprot/P0A8M3 P0A8M3]
 +
** [http://www.uniprot.org/uniprot/O04630 O04630]
 +
** [http://www.uniprot.org/uniprot/P18255 P18255]
 +
** [http://www.uniprot.org/uniprot/P18256 P18256]
 +
** [http://www.uniprot.org/uniprot/P04801 P04801]
 +
** [http://www.uniprot.org/uniprot/P07236 P07236]
 +
** [http://www.uniprot.org/uniprot/P26639 P26639]
 +
{{#set: direction=LEFT-TO-RIGHT}}
 +
{{#set: common name=ORF}}
 +
{{#set: common name=threonine--trna_ligase}}
 +
{{#set: ec number=EC-6.1.1.3}}
 +
{{#set: gene associated=Tiso_gene_13142|Tiso_gene_4406}}
 +
{{#set: in pathway=TRNA-CHARGING-PWY}}
 +
{{#set: reconstruction category=orthology|annotation}}
 +
{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-esiliculosus}}
 +
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:56, 21 March 2018

Reaction THREONINE--TRNA-LIGASE-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • ORF
    • threonine--trna_ligase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 ATP[c] + 1 L-threonine[c] + 1 a tRNAthr[c] => 1 an L-threonyl-[tRNAthr][c] + 1 diphosphate[c] + 1 AMP[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=CARBON-DIOXIDE&oldid=37466"