Difference between revisions of "Tiso gene 342"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERTRANSAM-RXN PSERTRANSAM-RXN] == * direction: ** REVERSIBLE * common name: ** ORF ** phosphoseri...")
(Created page with "Category:Gene == Gene Tiso_gene_5716 == * right end position: ** 3268 * transcription direction: ** NEGATIVE * left end position: ** 627 * centisome position: ** 4.8119726...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PSERTRANSAM-RXN PSERTRANSAM-RXN] ==
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== Gene Tiso_gene_5716 ==
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* direction:
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* right end position:
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** REVERSIBLE
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** 3268
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* common name:
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* transcription direction:
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** ORF
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** NEGATIVE
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** phosphoserine_aminotransferase
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* left end position:
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* ec number:
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** 627
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** [http://enzyme.expasy.org/EC/2.6.1.52 EC-2.6.1.52]
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* centisome position:
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** 4.8119726   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN-12086]]
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** 1 [[3-P-SERINE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[3-P-HYDROXYPYRUVATE]][c]
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** Source: [[annotation-in-silico_annotation]]
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* With common name(s):
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*** Assignment: ec-number
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** 1 3-phospho-L-serine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 3-phospho-hydroxypyruvate[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_15686]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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* [[Tiso_gene_17123]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[SERSYN-PWY]], L-serine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=SERSYN-PWY SERSYN-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-esiliculosus]]
 
** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Reaction: [[RXN-12579]]
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* Category: [[manual]]
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** Source: [[manual-primary_network]]
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* Category: [[annotation]]
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** Source: [[annotation-experimental_annotation]]
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*** Tool: [[pathwaytools]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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* Reaction: [[TRIACYLGLYCEROL-LIPASE-RXN]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: ec-number
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** Source: [[orthology-esiliculosus]]
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== Pathways associated ==
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* [[LIPAS-PWY]]
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* [[PWY-6857]]
 
== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=3268}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14329 14329]
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{{#set: transcription direction=NEGATIVE}}
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* LIGAND-RXN:
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{{#set: left end position=627}}
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** [http://www.genome.jp/dbget-bin/www_bget?R04173 R04173]
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{{#set: centisome position=4.8119726    }}
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* UNIPROT:
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{{#set: reaction associated=RXN-12086|RXN-12579|TRIACYLGLYCEROL-LIPASE-RXN}}
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** [http://www.uniprot.org/uniprot/P10658 P10658]
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{{#set: pathway associated=LIPAS-PWY|PWY-6857}}
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** [http://www.uniprot.org/uniprot/P23721 P23721]
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** [http://www.uniprot.org/uniprot/Q9PIH3 Q9PIH3]
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** [http://www.uniprot.org/uniprot/Q9CHW5 Q9CHW5]
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** [http://www.uniprot.org/uniprot/P44336 P44336]
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** [http://www.uniprot.org/uniprot/O34370 O34370]
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** [http://www.uniprot.org/uniprot/P62676 P62676]
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** [http://www.uniprot.org/uniprot/P33330 P33330]
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** [http://www.uniprot.org/uniprot/P19689 P19689]
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{{#set: direction=REVERSIBLE}}
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{{#set: common name=ORF}}
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{{#set: common name=phosphoserine_aminotransferase}}
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{{#set: ec number=EC-2.6.1.52}}
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{{#set: gene associated=Tiso_gene_15686|Tiso_gene_17123}}
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{{#set: in pathway=SERSYN-PWY}}
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{{#set: reconstruction category=orthology|manual|annotation}}
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{{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:01, 21 March 2018

Gene Tiso_gene_5716

  • right end position:
    • 3268
  • transcription direction:
    • NEGATIVE
  • left end position:
    • 627
  • centisome position:
    • 4.8119726
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_342&oldid=38055"