Difference between revisions of "Tiso gene 570"

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(Created page with "Category:Gene == Gene Tiso_gene_7738 == * left end position: ** 2525 * transcription direction: ** POSITIVE * right end position: ** 3789 * centisome position: ** 23.24404...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.9-RXN 1.5.1.9-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** saccharopine_dehydrogen...")
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[[Category:Gene]]
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[[Category:Reaction]]
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== Gene Tiso_gene_7738 ==
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=1.5.1.9-RXN 1.5.1.9-RXN] ==
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* left end position:
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* direction:
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** 2525
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** LEFT-TO-RIGHT
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* transcription direction:
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* common name:
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** POSITIVE
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** saccharopine_dehydrogenase
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* right end position:
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* ec number:
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** 3789
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** [http://enzyme.expasy.org/EC/1.5.1.9 EC-1.5.1.9]
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* centisome position:
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** 23.24404   
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* Synonym(s):
 
* Synonym(s):
  
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== Reactions associated ==
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== Reaction Formula ==
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* [[3.2.2.21-RXN]]
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* With identifiers:
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** in-silico_annotation
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** 1 [[WATER]][c] '''+''' 1 [[SACCHAROPINE]][c] '''+''' 1 [[NAD]][c] '''=>''' 1 [[ALLYSINE]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[GLT]][c] '''+''' 1 [[PROTON]][c]
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***ec-number
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* With common name(s):
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* [[RXN0-5189]]
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** 1 H2O[c] '''+''' 1 L-saccharopine[c] '''+''' 1 NAD+[c] '''=>''' 1 (S)-2-amino-6-oxohexanoate[c] '''+''' 1 NADH[c] '''+''' 1 L-glutamate[c] '''+''' 1 H+[c]
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** in-silico_annotation
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***ec-number
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== Genes associated with this reaction  ==
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== Pathways associated ==
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Genes have been associated with this reaction based on different elements listed below.
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* Gene: [[Tiso_gene_7039]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_1156]]
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** Source: [[orthology-athaliana]]
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* Gene: [[Tiso_gene_10095]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_7038]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_9366]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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* Gene: [[Tiso_gene_4160]]
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** Source: [[annotation-in-silico_annotation]]
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*** Assignment: AUTOMATED-NAME-MATCH
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** Source: [[orthology-esiliculosus]]
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== Pathways ==
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* [[LYSINE-DEG1-PWY]], L-lysine degradation XI (mammalian): [http://metacyc.org/META/NEW-IMAGE?object=LYSINE-DEG1-PWY LYSINE-DEG1-PWY]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-athaliana]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
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{{#set: left end position=2525}}
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* RHEA:
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{{#set: transcription direction=POSITIVE}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24520 24520]
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{{#set: right end position=3789}}
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* LIGAND-RXN:
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{{#set: centisome position=23.24404    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R02313 R02313]
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{{#set: reaction associated=3.2.2.21-RXN|RXN0-5189}}
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=saccharopine_dehydrogenase}}
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{{#set: ec number=EC-1.5.1.9}}
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{{#set: gene associated=Tiso_gene_7039|Tiso_gene_1156|Tiso_gene_10095|Tiso_gene_7038|Tiso_gene_9366|Tiso_gene_4160}}
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{{#set: in pathway=LYSINE-DEG1-PWY}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:01, 21 March 2018

Reaction 1.5.1.9-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • saccharopine_dehydrogenase
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • 1 H2O[c] + 1 L-saccharopine[c] + 1 NAD+[c] => 1 (S)-2-amino-6-oxohexanoate[c] + 1 NADH[c] + 1 L-glutamate[c] + 1 H+[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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