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Line 1: |
| − | [[Category:Reaction]] | + | [[Category:Gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9524 RXN-9524] == | + | == Gene Tiso_gene_5749 == |
| − | * direction: | + | * right end position: |
| − | ** LEFT-TO-RIGHT | + | ** 4260 |
| − | * common name: | + | * transcription direction: |
| − | ** 3-oxo-octanoyl-[acyl-carrier protein] reductase | + | ** POSITIVE |
| − | ** polyketide_synthase
| + | * left end position: |
| − | ** 3-oxoacyl-(acyl-carrier-protein)
| + | ** 2525 |
| − | * ec number: | + | * centisome position: |
| − | ** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86] | + | ** 19.453005 |
| − | ** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85] | + | |
| − | ** [http://enzyme.expasy.org/EC/1.1.1.100 EC-1.1.1.100] | + | |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reactions associated == |
| − | * With identifiers: | + | * Reaction: [[5.99.1.2-RXN]] |
| − | ** 1 [[PROTON]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[3-Oxo-octanoyl-ACPs]][c] '''=>''' 1 [[3-Hydroxy-octanoyl-ACPs]][c] '''+''' 1 [[NADP]][c]
| + | |
| − | * With common name(s):
| + | |
| − | ** 1 H+[c] '''+''' 1 NADPH[c] '''+''' 1 a 3-oxo-octanoyl-[acp][c] '''=>''' 1 a (3R)-3-hydroxyoctanoyl-[acp][c] '''+''' 1 NADP+[c]
| + | |
| − | | + | |
| − | == Genes associated with this reaction ==
| + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * [[Tiso_gene_13083]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** EXPERIMENTAL_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[synechocystis]]
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | * [[Tiso_gene_135]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_500]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_13394]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_136]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_9885]]
| + | |
| − | ** EXPERIMENTAL_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_624]]
| + | |
| − | ** [[pantograph]]-[[synechocystis]]
| + | |
| − | * [[Tiso_gene_10876]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_10415]]
| + | |
| − | ** [[pantograph]]-[[synechocystis]]
| + | |
| − | * [[Tiso_gene_16579]]
| + | |
| − | ** [[pantograph]]-[[synechocystis]]
| + | |
| − | == Pathways ==
| + | |
| − | * [[PWY-5971]], palmitate biosynthesis II (bacteria and plants): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5971 PWY-5971]
| + | |
| − | ** '''31''' reactions found over '''31''' reactions in the full pathway
| + | |
| − | * [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
| + | |
| − | ** '''31''' reactions found over '''31''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[orthology]]
| + | |
| − | ** Source: [[orthology-synechocystis]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | ** Source: [[orthology-esiliculosus]]
| + | |
| − | *** Tool: [[pantograph]]
| + | |
| − | * Category: [[manual]]
| + | |
| − | ** Source: [[manual-primary_network]]
| + | |
| − | * Category: [[annotation]]
| + | |
| − | ** Source: [[annotation-experimental_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| | ** Source: [[annotation-in-silico_annotation]] | | ** Source: [[annotation-in-silico_annotation]] |
| − | *** Tool: [[pathwaytools]] | + | *** Assignment: automated-name-match |
| | + | == Pathways associated == |
| | == External links == | | == External links == |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | {{#set: right end position=4260}} |
| − | {{#set: common name=3-oxo-octanoyl-[acyl-carrier protein] reductase}} | + | {{#set: transcription direction=POSITIVE}} |
| − | {{#set: common name=polyketide_synthase}} | + | {{#set: left end position=2525}} |
| − | {{#set: common name=3-oxoacyl-(acyl-carrier-protein)}} | + | {{#set: centisome position=19.453005 }} |
| − | {{#set: ec number=EC-2.3.1.86}} | + | {{#set: reaction associated=5.99.1.2-RXN}} |
| − | {{#set: ec number=EC-2.3.1.85}}
| + | |
| − | {{#set: ec number=EC-1.1.1.100}}
| + | |
| − | {{#set: gene associated=Tiso_gene_13083|Tiso_gene_135|Tiso_gene_500|Tiso_gene_13394|Tiso_gene_136|Tiso_gene_9885|Tiso_gene_624|Tiso_gene_10876|Tiso_gene_10415|Tiso_gene_16579}}
| + | |
| − | {{#set: in pathway=PWY-5971|PWY-5994}}
| + | |
| − | {{#set: reconstruction category=orthology|manual|annotation}}
| + | |
| − | {{#set: reconstruction source=annotation-experimental_annotation|manual-primary_network|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
| + | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| + | |
