Difference between revisions of "Tiso gene 17637"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTONE-LYSINE-N-METHYLTRANSFERASE-RXN HISTONE-LYSINE-N-METHYLTRANSFERASE-RXN] == * direction: ** L...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13431 RXN-13431] == * direction: ** LEFT-TO-RIGHT * ec number: ** [http://enzyme.expasy.org/EC/...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=HISTONE-LYSINE-N-METHYLTRANSFERASE-RXN HISTONE-LYSINE-N-METHYLTRANSFERASE-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-13431 RXN-13431] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
−
* common name:
 
−
** ORF
 
−
** probable_histone-lysine_n-methyltransferase_nsd2-like
 
−
** histone-lysine_n-methyltransferase_setmar
 
−
** histone-lysine_n-_h3_lysine-79_specific
 
−
** histone-lysine_n-h3lysine-79specific
 
−
** methyltransferase_type_11
 
−
** mixed-lineage_leukemia_protein
 
−
** histone-lysine_n-methyltransferase_mll3
 
−
** histone-lysine_n-_h3_lysine-9_specific_suvh6
 
−
** pentatricopeptide_repeat_domain-containing_protein
 
−
** histone-lysine_n-methyltransferase_suv39h1
 
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.1.1.43 EC-2.1.1.43]
+
** [http://enzyme.expasy.org/EC/2.3.1 EC-2.3.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[Histone-L-lysine]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[CPD-8579]][c] '''+''' 1 [[ADENOSYL-HOMO-CYS]][c]
+
** 21 [[PROTON]][c] '''+''' 1 [[ACETYL-COA]][c] '''+''' 13 [[NADPH]][c] '''+''' 9 [[MALONYL-COA]][c] '''=>''' 1 [[5Z8Z11Z14Z17Z-EICOSAPENTAENOATE]][c] '''+''' 8 [[WATER]][c] '''+''' 9 [[CARBON-DIOXIDE]][c] '''+''' 10 [[CO-A]][c] '''+''' 13 [[NADP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 a [histone]-L-lysine[c] '''+''' 1 S-adenosyl-L-methionine[c] '''=>''' 1 H+[c] '''+''' 1 a [histone] N6-methyl-L-lysine[c] '''+''' 1 S-adenosyl-L-homocysteine[c]
+
** 21 H+[c] '''+''' 1 acetyl-CoA[c] '''+''' 13 NADPH[c] '''+''' 9 malonyl-CoA[c] '''=>''' 1 icosapentaenoate[c] '''+''' 8 H2O[c] '''+''' 9 CO2[c] '''+''' 10 coenzyme A[c] '''+''' 13 NADP+[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
−
Genes have been associated with this reaction based on different elements listed below.
 
−
* [[Tiso_gene_19883]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_15903]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_10757]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_13588]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_10659]]
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_15293]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_13974]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_2144]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_4657]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_5703]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_344]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_11001]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_13973]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_10896]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_8895]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_18698]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
* [[Tiso_gene_14051]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_11071]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_8634]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
−
* [[Tiso_gene_3977]]
 
−
** IN-SILICO_ANNOTATION
 
−
***EC-NUMBER
 
−
** [[pantograph]]-[[esiliculosus]]
 
 
== Pathways  ==
 
== Pathways  ==
 +
* [[PWY-7050]], icosapentaenoate biosynthesis IV (bacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7050 PWY-7050]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
+
* Category: [[gap-filling]]
−
** Source: [[orthology-esiliculosus]]
+
** Source: [[gap-filling-gapfilling_solution_with_meneco_draft_medium]]
−
*** Tool: [[pantograph]]
+
*** Tool: [[meneco]]
−
* Category: [[annotation]]
+
**** Comment: [[added for gapfilling]]
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R03938 R03938]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q43088 Q43088]
 
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ORF}}
+
{{#set: ec number=EC-2.3.1}}
−
{{#set: common name=probable_histone-lysine_n-methyltransferase_nsd2-like}}
+
{{#set: in pathway=PWY-7050}}
−
{{#set: common name=histone-lysine_n-methyltransferase_setmar}}
+
{{#set: reconstruction category=gap-filling}}
−
{{#set: common name=histone-lysine_n-_h3_lysine-79_specific}}
+
{{#set: reconstruction source=gap-filling-gapfilling_solution_with_meneco_draft_medium}}
−
{{#set: common name=histone-lysine_n-h3lysine-79specific}}
+
{{#set: reconstruction tool=meneco}}
−
{{#set: common name=methyltransferase_type_11}}
+
{{#set: reconstruction comment=added for gapfilling}}
−
{{#set: common name=mixed-lineage_leukemia_protein}}
+
−
{{#set: common name=histone-lysine_n-methyltransferase_mll3}}
+
−
{{#set: common name=histone-lysine_n-_h3_lysine-9_specific_suvh6}}
+
−
{{#set: common name=pentatricopeptide_repeat_domain-containing_protein}}
+
−
{{#set: common name=histone-lysine_n-methyltransferase_suv39h1}}
+
−
{{#set: ec number=EC-2.1.1.43}}
+
−
{{#set: gene associated=Tiso_gene_19883|Tiso_gene_15903|Tiso_gene_10757|Tiso_gene_13588|Tiso_gene_10659|Tiso_gene_15293|Tiso_gene_13974|Tiso_gene_2144|Tiso_gene_4657|Tiso_gene_5703|Tiso_gene_344|Tiso_gene_11001|Tiso_gene_13973|Tiso_gene_10896|Tiso_gene_8895|Tiso_gene_18698|Tiso_gene_14051|Tiso_gene_11071|Tiso_gene_8634|Tiso_gene_3977}}
+
−
{{#set: in pathway=}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 16:04, 21 March 2018

Reaction RXN-13431

  • direction:
    • LEFT-TO-RIGHT
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Pathways

  • PWY-7050, icosapentaenoate biosynthesis IV (bacteria): PWY-7050
    • 1 reactions found over 1 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Tiso_gene_17637&oldid=38574"