Difference between revisions of "RXN-7607"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PABASYN-RXN PABASYN-RXN] == * direction: ** REVERSIBLE * common name: ** p-aminobenzoic_acid_syntha...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6479 RXN0-6479] == * direction: ** LEFT-TO-RIGHT * common name: ** exosome_complex_exonuclease...")
Line 1: Line 1:
 
[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=PABASYN-RXN PABASYN-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-6479 RXN0-6479] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** p-aminobenzoic_acid_synthase
+
** exosome_complex_exonuclease
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/2.6.1.85 EC-2.6.1.85]
+
** [http://enzyme.expasy.org/EC/3.1.13.1 EC-3.1.13.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[GLN]][c] '''+''' 1 [[CHORISMATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[4-AMINO-4-DEOXYCHORISMATE]][c]
+
** n [[WATER]][c] '''+''' 1 [[CPD0-2351]][c] '''=>''' n [[Nucleoside-Monophosphates]][c] '''+''' 1 [[CPD0-2352]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-glutamine[c] '''+''' 1 chorismate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 4-amino-4-deoxychorismate[c]
+
** n H2O[c] '''+''' 1 a tRNA precursor with a 5' extension and a long 3' trailer[c] '''=>''' n a nucleoside 5'-monophosphate[c] '''+''' 1 a tRNA precursor with a 5' extension and a short 3' extension[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_13939]]
+
* Gene: [[Tiso_gene_11612]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***AUTOMATED-NAME-MATCH
+
*** Assignment: EC-NUMBER
−
** [[pantograph]]-[[athaliana]]
+
* Gene: [[Tiso_gene_11613]]
−
** [[pantograph]]-[[synechocystis]]
+
** Source: [[annotation-in-silico_annotation]]
−
** [[pantograph]]-[[esiliculosus]]
+
*** Assignment: EC-NUMBER
−
* [[Tiso_gene_11176]]
+
−
** [[pantograph]]-[[synechocystis]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-6543]], 4-aminobenzoate biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6543 PWY-6543]
+
* [[PWY0-1479]], tRNA processing: [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1479 PWY0-1479]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''10''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-synechocystis]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11672 11672]
+
{{#set: common name=exosome_complex_exonuclease}}
−
* LIGAND-RXN:
+
{{#set: ec number=EC-3.1.13.1}}
−
** [http://www.genome.jp/dbget-bin/www_bget?R01716 R01716]
+
{{#set: gene associated=Tiso_gene_11612|Tiso_gene_11613}}
−
{{#set: direction=REVERSIBLE}}
+
{{#set: in pathway=PWY0-1479}}
−
{{#set: common name=p-aminobenzoic_acid_synthase}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: ec number=EC-2.6.1.85}}
+
{{#set: reconstruction source=annotation-in-silico_annotation}}
−
{{#set: gene associated=Tiso_gene_13939|Tiso_gene_11176}}
+
{{#set: reconstruction tool=pathwaytools}}
−
{{#set: in pathway=PWY-6543}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-synechocystis|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 16:05, 21 March 2018

Reaction RXN0-6479

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • exosome_complex_exonuclease
  • ec number:
  • Synonym(s):

Reaction Formula

  • With identifiers:
  • With common name(s):
    • n H2O[c] + 1 a tRNA precursor with a 5' extension and a long 3' trailer[c] => n a nucleoside 5'-monophosphate[c] + 1 a tRNA precursor with a 5' extension and a short 3' extension[c]

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY0-1479, tRNA processing: PWY0-1479
    • 4 reactions found over 10 reactions in the full pathway

Reconstruction information

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=RXN-7607&oldid=38642"