Difference between revisions of "L-RIBULOSE-5-P"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-GLU-AMINOTRANSFERASE-RXN ORNITHINE-GLU-AMINOTRANSFERASE-RXN] == * direction: ** REVERSIBL...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ADENOSYLCOBINAMIDE-GDP ADENOSYLCOBINAMIDE-GDP] == * smiles: ** CC(OP([O-])(=O)OP(=O)([O-])OCC1(...")
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[[Category:Reaction]]
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[[Category:Metabolite]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ORNITHINE-GLU-AMINOTRANSFERASE-RXN ORNITHINE-GLU-AMINOTRANSFERASE-RXN] ==
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=ADENOSYLCOBINAMIDE-GDP ADENOSYLCOBINAMIDE-GDP] ==
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* direction:
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* smiles:
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** REVERSIBLE
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** CC(OP([O-])(=O)OP(=O)([O-])OCC1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23))))CNC(=O)CCC%11(C)(C(CC(=O)N)C%13(C%14(C)(C(C)(CC(N)=O)C(CCC(N)=O)C7(=[N+]([Co--]8%12(CC6(C(O)C(C(N5(C=NC4(C(N)=NC=NC=45)))O6)O))([N+]%10(C(=CC9(C(CCC(N)=O)C(C)(CC(N)=O)C(=C(C)7)[N+]8=9))C(C)(C)C(CCC(N)=O)C=%10C(C)=C%11N%12%13)))%14))))
 
* common name:
 
* common name:
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** Ornithine--oxo-glutarate aminotransferase
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** adenosylcobinamide-GDP
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* ec number:
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* inchi key:
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** [http://enzyme.expasy.org/EC/2.6.1.13 EC-2.6.1.13]
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** InChIKey=IQTYKHRKNGVJEO-RRMAJTJESA-K
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* molecular weight:
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** 1663.504   
 
* Synonym(s):
 
* Synonym(s):
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** Adenosine-GDP-cobinamide
  
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== Reaction Formula ==
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== Reaction(s) known to consume the compound ==
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* With identifiers:
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== Reaction(s) known to produce the compound ==
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** 1 [[L-ORNITHINE]][c] '''+''' 1 [[2-KETOGLUTARATE]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c]
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== Reaction(s) of unknown directionality ==
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* With common name(s):
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* [[COBALAMINSYN-RXN]]
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** 1 L-ornithine[c] '''+''' 1 2-oxoglutarate[c] '''<=>''' 1 L-glutamate[c] '''+''' 1 L-glutamate-5-semialdehyde[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_11231]]
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** [[pantograph]]-[[synechocystis]]
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== Pathways  ==
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* [[ARGASEDEG-PWY]], L-arginine degradation I (arginase pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARGASEDEG-PWY ARGASEDEG-PWY]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6922]], L-N&delta;-acetylornithine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6922 PWY-6922]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6344]], L-ornithine degradation II (Stickland reaction): [http://metacyc.org/META/NEW-IMAGE?object=PWY-6344 PWY-6344]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-3341]], L-proline biosynthesis III: [http://metacyc.org/META/NEW-IMAGE?object=PWY-3341 PWY-3341]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[ARG-PRO-PWY]], L-arginine degradation VI (arginase 2 pathway): [http://metacyc.org/META/NEW-IMAGE?object=ARG-PRO-PWY ARG-PRO-PWY]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-4981]], L-proline biosynthesis II (from arginine): [http://metacyc.org/META/NEW-IMAGE?object=PWY-4981 PWY-4981]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=ARGININE-SYN4-PWY ARGININE-SYN4-PWY]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[CITRULBIO-PWY]], L-citrulline biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=CITRULBIO-PWY CITRULBIO-PWY]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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== External links  ==
 
== External links  ==
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* RHEA:
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* LIGAND-CPD:
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25160 25160]
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** [http://www.genome.jp/dbget-bin/www_bget?C06510 C06510]
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* LIGAND-RXN:
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* HMDB : HMDB12185
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** [http://www.genome.jp/dbget-bin/www_bget?R00667 R00667]
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* CHEBI:
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{{#set: direction=REVERSIBLE}}
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** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=60487 60487]
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{{#set: common name=Ornithine--oxo-glutarate aminotransferase}}
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* BIGG : agdpcbi
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{{#set: ec number=EC-2.6.1.13}}
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* PUBCHEM:
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{{#set: gene associated=Tiso_gene_11231}}
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** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=70678596 70678596]
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{{#set: in pathway=ARGASEDEG-PWY|PWY-6922|PWY-6344|PWY-3341|ARG-PRO-PWY|PWY-4981|ARGININE-SYN4-PWY|CITRULBIO-PWY}}
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{{#set: smiles=CC(OP([O-])(=O)OP(=O)([O-])OCC1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23))))CNC(=O)CCC%11(C)(C(CC(=O)N)C%13(C%14(C)(C(C)(CC(N)=O)C(CCC(N)=O)C7(=[N+]([Co--]8%12(CC6(C(O)C(C(N5(C=NC4(C(N)=NC=NC=45)))O6)O))([N+]%10(C(=CC9(C(CCC(N)=O)C(C)(CC(N)=O)C(=C(C)7)[N+]8=9))C(C)(C)C(CCC(N)=O)C=%10C(C)=C%11N%12%13)))%14))))}}
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{{#set: reconstruction category=orthology}}
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{{#set: common name=adenosylcobinamide-GDP}}
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{{#set: reconstruction source=orthology-synechocystis}}
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{{#set: inchi key=InChIKey=IQTYKHRKNGVJEO-RRMAJTJESA-K}}
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{{#set: reconstruction tool=pantograph}}
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{{#set: molecular weight=1663.504    }}
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{{#set: common name=Adenosine-GDP-cobinamide}}
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{{#set: reversible reaction associated=COBALAMINSYN-RXN}}

Revision as of 16:06, 21 March 2018

Metabolite ADENOSYLCOBINAMIDE-GDP

  • smiles:
    • CC(OP([O-])(=O)OP(=O)([O-])OCC1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23))))CNC(=O)CCC%11(C)(C(CC(=O)N)C%13(C%14(C)(C(C)(CC(N)=O)C(CCC(N)=O)C7(=[N+]([Co--]8%12(CC6(C(O)C(C(N5(C=NC4(C(N)=NC=NC=45)))O6)O))([N+]%10(C(=CC9(C(CCC(N)=O)C(C)(CC(N)=O)C(=C(C)7)[N+]8=9))C(C)(C)C(CCC(N)=O)C=%10C(C)=C%11N%12%13)))%14))))
  • common name:
    • adenosylcobinamide-GDP
  • inchi key:
    • InChIKey=IQTYKHRKNGVJEO-RRMAJTJESA-K
  • molecular weight:
    • 1663.504
  • Synonym(s):
    • Adenosine-GDP-cobinamide

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CC(OP([O-])(=O)OP(=O)([O-])OCC1(OC(C(O)C(O)1)N3(C=NC2(C(=O)NC(N)=NC=23))))CNC(=O)CCC%11(C)(C(CC(=O)N)C%13(C%14(C)(C(C)(CC(N)=O)C(CCC(N)=O)C7(=[N+]([Co--]8%12(CC6(C(O)C(C(N5(C=NC4(C(N)=NC=NC=45)))O6)O))([N+]%10(C(=CC9(C(CCC(N)=O)C(C)(CC(N)=O)C(=C(C)7)[N+]8=9))C(C)(C)C(CCC(N)=O)C=%10C(C)=C%11N%12%13)))%14))))" cannot be used as a page name in this wiki.



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