Difference between revisions of "Tiso gene 12899"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-722 RXN0-722] == * direction: ** LEFT-TO-RIGHT * common name: ** ribonucleoside-diphosphate_re...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.37-RXN 3.2.1.37-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Beta-xylosidase/alpha...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN0-722 RXN0-722] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=3.2.1.37-RXN 3.2.1.37-RXN] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** ribonucleoside-diphosphate_reductase
+
** Beta-xylosidase/alpha-L-arabinofuranosidase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/1.17.4.1 EC-1.17.4.1]
+
** [http://enzyme.expasy.org/EC/3.2.1.37 EC-3.2.1.37]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[UDP]][c] '''+''' 1 [[Reduced-NrdH-Proteins]][c] '''=>''' 1 [[WATER]][c] '''+''' 1 [[DUDP]][c] '''+''' 1 [[Oxidized-NrdH-Proteins]][c]
+
** n [[WATER]][c] '''+''' 1 [[1-4-D-xylooligosaccharides]][c] '''=>''' n [[BETA-D-XYLOSE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 UDP[c] '''+''' 1 a reduced NrdH glutaredoxin-like protein[c] '''=>''' 1 H2O[c] '''+''' 1 dUDP[c] '''+''' 1 an oxidized NrdH glutaredoxin-like protein[c]
+
** n H2O[c] '''+''' 1 a (1->4)-β-D-xylan oligosaccharide[c] '''=>''' n β-D-xylopyranose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_10617]]
+
* Gene: [[Tiso_gene_10897]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[annotation-experimental_annotation]]
−
***EC-NUMBER
+
*** Assignment: AUTOMATED-NAME-MATCH
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_10138]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_9915]]
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_9916]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-166 PWY0-166]
 
−
** '''12''' reactions found over '''17''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
−
* Category: [[orthology]]
 
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-experimental_annotation]]
 
** Source: [[annotation-experimental_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-in-silico_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
 +
* UNIPROT:
 +
** [http://www.uniprot.org/uniprot/P45982 P45982]
 +
** [http://www.uniprot.org/uniprot/Q9CFH1 Q9CFH1]
 +
** [http://www.uniprot.org/uniprot/P77713 P77713]
 +
** [http://www.uniprot.org/uniprot/P94489 P94489]
 +
** [http://www.uniprot.org/uniprot/P45702 P45702]
 +
** [http://www.uniprot.org/uniprot/P48790 P48790]
 +
** [http://www.uniprot.org/uniprot/P07129 P07129]
 +
** [http://www.uniprot.org/uniprot/Q7M0Q6 Q7M0Q6]
 +
** [http://www.uniprot.org/uniprot/P36906 P36906]
 +
** [http://www.uniprot.org/uniprot/P49943 P49943]
 +
** [http://www.uniprot.org/uniprot/O42698 O42698]
 +
** [http://www.uniprot.org/uniprot/P23552 P23552]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=ribonucleoside-diphosphate_reductase}}
+
{{#set: common name=Beta-xylosidase/alpha-L-arabinofuranosidase}}
−
{{#set: ec number=EC-1.17.4.1}}
+
{{#set: ec number=EC-3.2.1.37}}
−
{{#set: gene associated=Tiso_gene_10617|Tiso_gene_10138|Tiso_gene_9915|Tiso_gene_9916}}
+
{{#set: gene associated=Tiso_gene_10897}}
−
{{#set: in pathway=PWY0-166}}
+
{{#set: in pathway=}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: reconstruction category=annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
{{#set: reconstruction source=annotation-experimental_annotation}}
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+
{{#set: reconstruction tool=pathwaytools}}

Revision as of 16:07, 21 March 2018

Reaction 3.2.1.37-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • Beta-xylosidase/alpha-L-arabinofuranosidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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