Difference between revisions of "DEAMIDO-NAD"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9650 RXN-9650] == * direction: ** LEFT-TO-RIGHT * common name: ** polyketide_synthase ** 3-oxoa...")
(Created page with "Category:Gene == Gene Tiso_gene_1163 == * right end position: ** 14054 * transcription direction: ** POSITIVE * left end position: ** 12300 * centisome position: ** 48.240...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Gene]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-9650 RXN-9650] ==
+
== Gene Tiso_gene_1163 ==
−
* direction:
+
* right end position:
−
** LEFT-TO-RIGHT
+
** 14054
−
* common name:
+
* transcription direction:
−
** polyketide_synthase
+
** POSITIVE
−
** 3-oxoacyl-synthase
+
* left end position:
−
* ec number:
+
** 12300
−
** [http://enzyme.expasy.org/EC/2.3.1.86 EC-2.3.1.86]
+
* centisome position:
−
** [http://enzyme.expasy.org/EC/2.3.1.85 EC-2.3.1.85]
+
** 48.240967   
−
** [http://enzyme.expasy.org/EC/2.3.1.41 EC-2.3.1.41]
+
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reactions associated ==
−
* With identifiers:
+
* Reaction: [[DIACYLGLYKIN-RXN]]
−
** 1 [[Hexanoyl-ACPs]][c] '''+''' 1 [[MALONYL-COA]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-Oxo-octanoyl-ACPs]][c] '''+''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c]
+
** Source: [[annotation-in-silico_annotation]]
−
* With common name(s):
+
*** Assignment: ec-number
−
** 1 a hexanoyl-[acyl-carrier-protein][c] '''+''' 1 malonyl-CoA[c] '''+''' 1 H+[c] '''=>''' 1 a 3-oxo-octanoyl-[acp][c] '''+''' 1 CO2[c] '''+''' 1 coenzyme A[c]
+
* Reaction: [[NAD-KIN-RXN]]
−
 
+
** Source: [[annotation-in-silico_annotation]]
−
== Genes associated with this reaction  ==
+
*** Assignment: ec-number
−
Genes have been associated with this reaction based on different elements listed below.
+
* Reaction: [[RXN3DJ-11417]]
−
* [[Tiso_gene_10876]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_135]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_14485]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_19302]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_15991]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_136]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_13394]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_500]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
* [[Tiso_gene_5939]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
== Pathways  ==
+
−
* [[PWY-5994]], palmitate biosynthesis I (animals and fungi): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5994 PWY-5994]
+
−
** '''31''' reactions found over '''31''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
+
*** Assignment: automated-name-match
 +
* Reaction: [[SPHINGANINE-KINASE-RXN]]
 +
** Source: [[orthology-creinhardtii]]
 +
== Pathways associated ==
 +
* [[PWY3DJ-11470]]
 +
* [[PWY-7268]]
 +
* [[PWY-7269]]
 +
* [[PWY-7817]]
 +
* [[PWY-5129]]
 +
* [[PWY-5083]]
 +
* [[NADPHOS-DEPHOS-PWY-1]]
 +
* [[PWY-7119]]
 +
* [[PWY-7039]]
 +
* [[NADPHOS-DEPHOS-PWY]]
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
{{#set: right end position=14054}}
−
{{#set: common name=polyketide_synthase}}
+
{{#set: transcription direction=POSITIVE}}
−
{{#set: common name=3-oxoacyl-synthase}}
+
{{#set: left end position=12300}}
−
{{#set: ec number=EC-2.3.1.86}}
+
{{#set: centisome position=48.240967    }}
−
{{#set: ec number=EC-2.3.1.85}}
+
{{#set: reaction associated=DIACYLGLYKIN-RXN|NAD-KIN-RXN|RXN3DJ-11417|SPHINGANINE-KINASE-RXN}}
−
{{#set: ec number=EC-2.3.1.41}}
+
{{#set: pathway associated=PWY3DJ-11470|PWY-7268|PWY-7269|PWY-7817|PWY-5129|PWY-5083|NADPHOS-DEPHOS-PWY-1|PWY-7119|PWY-7039|NADPHOS-DEPHOS-PWY}}
−
{{#set: gene associated=Tiso_gene_10876|Tiso_gene_135|Tiso_gene_14485|Tiso_gene_19302|Tiso_gene_15991|Tiso_gene_136|Tiso_gene_13394|Tiso_gene_500|Tiso_gene_5939}}
+
−
{{#set: in pathway=PWY-5994}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 16:08, 21 March 2018

Gene Tiso_gene_1163

  • right end position:
    • 14054
  • transcription direction:
    • POSITIVE
  • left end position:
    • 12300
  • centisome position:
    • 48.240967
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=DEAMIDO-NAD&oldid=39032"