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| − | [[Category:Reaction]] | + | [[Category:Gene]] |
| − | == Reaction [http://metacyc.org/META/NEW-IMAGE?object=PYRIMSYN3-RXN PYRIMSYN3-RXN] == | + | == Gene Tiso_gene_8387 == |
| − | * direction: | + | * right end position: |
| − | ** LEFT-TO-RIGHT | + | ** 2571 |
| − | * common name: | + | * transcription direction: |
| − | ** phosphomethylpyrimidine_kinase | + | ** POSITIVE |
| − | ** thiamine_monophosphate_synthase | + | * left end position: |
| − | * ec number: | + | ** 383 |
| − | ** [http://enzyme.expasy.org/EC/2.7.4.7 EC-2.7.4.7] | + | * centisome position: |
| | + | ** 3.719169 |
| | * Synonym(s): | | * Synonym(s): |
| | | | |
| − | == Reaction Formula == | + | == Reactions associated == |
| − | * With identifiers:
| + | * Reaction: [[2.4.1.142-RXN]] |
| − | ** 1 [[ATP]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[AMINO-HYDROXYMETHYL-METHYLPYRIMIDINE-PP]][c]
| + | ** Source: [[annotation-in-silico_annotation]] |
| − | * With common name(s):
| + | *** Assignment: ec-number |
| − | ** 1 ATP[c] '''+''' 1 4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine[c] '''=>''' 1 ADP[c] '''+''' 1 4-amino-2-methyl-5-(diphosphomethyl)pyrimidine[c]
| + | |
| − | | + | |
| − | == Genes associated with this reaction ==
| + | |
| − | Genes have been associated with this reaction based on different elements listed below.
| + | |
| − | * [[Tiso_gene_2159]] | + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | * [[Tiso_gene_2160]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***EC-NUMBER
| + | |
| − | ** [[pantograph]]-[[athaliana]]
| + | |
| − | ** [[pantograph]]-[[esiliculosus]]
| + | |
| − | * [[Tiso_gene_16224]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***AUTOMATED-NAME-MATCH
| + | |
| − | * [[Tiso_gene_17192]]
| + | |
| − | ** IN-SILICO_ANNOTATION
| + | |
| − | ***AUTOMATED-NAME-MATCH
| + | |
| − | == Pathways ==
| + | |
| − | * [[PWY-6910]], hydroxymethylpyrimidine salvage: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6910 PWY-6910]
| + | |
| − | ** '''1''' reactions found over '''2''' reactions in the full pathway
| + | |
| − | * [[PWY-7282]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7282 PWY-7282]
| + | |
| − | ** '''6''' reactions found over '''9''' reactions in the full pathway
| + | |
| − | * [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6890 PWY-6890]
| + | |
| − | ** '''1''' reactions found over '''2''' reactions in the full pathway
| + | |
| − | * [[PWY-7356]], thiamine salvage IV (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7356 PWY-7356]
| + | |
| − | ** '''5''' reactions found over '''7''' reactions in the full pathway
| + | |
| − | * [[PWY-7357]], thiamine formation from pyrithiamine and oxythiamine (yeast): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7357 PWY-7357]
| + | |
| − | ** '''3''' reactions found over '''6''' reactions in the full pathway
| + | |
| − | == Reconstruction information ==
| + | |
| − | * Category: [[orthology]]
| + | |
| − | ** Source: [[orthology-athaliana]] | + | |
| − | *** Tool: [[pantograph]] | + | |
| | ** Source: [[orthology-esiliculosus]] | | ** Source: [[orthology-esiliculosus]] |
| − | *** Tool: [[pantograph]]
| + | == Pathways associated == |
| − | * Category: [[annotation]] | + | * [[MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS]] |
| − | ** Source: [[annotation-in-silico_annotation]]
| + | |
| − | *** Tool: [[pathwaytools]]
| + | |
| | == External links == | | == External links == |
| − | * RHEA:
| + | {{#set: right end position=2571}} |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19893 19893]
| + | {{#set: transcription direction=POSITIVE}} |
| − | * LIGAND-RXN:
| + | {{#set: left end position=383}} |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R04509 R04509]
| + | {{#set: centisome position=3.719169 }} |
| − | * UNIPROT:
| + | {{#set: reaction associated=2.4.1.142-RXN}} |
| − | ** [http://www.uniprot.org/uniprot/Q9JTE1 Q9JTE1]
| + | {{#set: pathway associated=MANNOSYL-CHITO-DOLICHOL-BIOSYNTHESIS}} |
| − | ** [http://www.uniprot.org/uniprot/Q9PNL2 Q9PNL2]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9CI79 Q9CI79]
| + | |
| − | ** [http://www.uniprot.org/uniprot/Q9CG47 Q9CG47]
| + | |
| − | {{#set: direction=LEFT-TO-RIGHT}} | + | |
| − | {{#set: common name=phosphomethylpyrimidine_kinase}} | + | |
| − | {{#set: common name=thiamine_monophosphate_synthase}} | + | |
| − | {{#set: ec number=EC-2.7.4.7}} | + | |
| − | {{#set: gene associated=Tiso_gene_2159|Tiso_gene_2160|Tiso_gene_16224|Tiso_gene_17192}} | + | |
| − | {{#set: in pathway=PWY-6910|PWY-7282|PWY-6890|PWY-7356|PWY-7357}} | + | |
| − | {{#set: reconstruction category=orthology|annotation}}
| + | |
| − | {{#set: reconstruction source=orthology-athaliana|annotation-in-silico_annotation|orthology-esiliculosus}}
| + | |
| − | {{#set: reconstruction tool=pantograph|pathwaytools}}
| + | |
