Difference between revisions of "SAMDECARB-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCOKIN-RXN GLUCOKIN-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** glucokinase ** hexoki...")
(Created page with "Category:Gene == Gene Tiso_gene_15890 == * right end position: ** 380 * transcription direction: ** POSITIVE * left end position: ** 119 * centisome position: ** 2.517453...")
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[[Category:Reaction]]
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[[Category:Gene]]
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== Reaction [http://metacyc.org/META/NEW-IMAGE?object=GLUCOKIN-RXN GLUCOKIN-RXN] ==
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== Gene Tiso_gene_15890 ==
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* direction:
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* right end position:
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** LEFT-TO-RIGHT
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** 380
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* common name:
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* transcription direction:
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** glucokinase
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** POSITIVE
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** hexokinase
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* left end position:
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* ec number:
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** 119
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** [http://enzyme.expasy.org/EC/2.7.1.1 EC-2.7.1.1]
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* centisome position:
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** [http://enzyme.expasy.org/EC/2.7.1.2 EC-2.7.1.2]
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** 2.517453   
 
* Synonym(s):
 
* Synonym(s):
  
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== Reaction Formula ==
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== Reactions associated ==
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* With identifiers:
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* Reaction: [[RXN0-1281]]
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** 1 [[ATP]][c] '''+''' 1 [[Glucopyranose]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[D-glucopyranose-6-phosphate]][c] '''+''' 1 [[PROTON]][c]
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* With common name(s):
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** 1 ATP[c] '''+''' 1 D-glucopyranose[c] '''=>''' 1 ADP[c] '''+''' 1 D-glucopyranose 6-phosphate[c] '''+''' 1 H+[c]
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== Genes associated with this reaction  ==
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Genes have been associated with this reaction based on different elements listed below.
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* [[Tiso_gene_3107]]
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** IN-SILICO_ANNOTATION
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***AUTOMATED-NAME-MATCH
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** EXPERIMENTAL_ANNOTATION
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***AUTOMATED-NAME-MATCH
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* [[Tiso_gene_1303]]
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** IN-SILICO_ANNOTATION
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***EC-NUMBER
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** EXPERIMENTAL_ANNOTATION
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***EC-NUMBER
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** [[pantograph]]-[[synechocystis]]
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** [[pantograph]]-[[esiliculosus]]
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== Pathways  ==
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* [[PWY-7238]], sucrose biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7238 PWY-7238]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[GLYCOCAT-PWY]], glycogen degradation I: [http://metacyc.org/META/NEW-IMAGE?object=GLYCOCAT-PWY GLYCOCAT-PWY]
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[TREDEGLOW-PWY]], trehalose degradation I (low osmolarity): [http://metacyc.org/META/NEW-IMAGE?object=TREDEGLOW-PWY TREDEGLOW-PWY]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[P124-PWY]], Bifidobacterium shunt: [http://metacyc.org/META/NEW-IMAGE?object=P124-PWY P124-PWY]
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** '''11''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-7385]], 1,3-propanediol biosynthesis (engineered): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7385 PWY-7385]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY0-1182]], trehalose degradation II (trehalase): [http://metacyc.org/META/NEW-IMAGE?object=PWY0-1182 PWY0-1182]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5514]], UDP-N-acetyl-D-galactosamine biosynthesis II: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5514 PWY-5514]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[GLUCOSE1PMETAB-PWY]], glucose and glucose-1-phosphate degradation: [http://metacyc.org/META/NEW-IMAGE?object=GLUCOSE1PMETAB-PWY GLUCOSE1PMETAB-PWY]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-621]], sucrose degradation III (sucrose invertase): [http://metacyc.org/META/NEW-IMAGE?object=PWY-621 PWY-621]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose): [http://metacyc.org/META/NEW-IMAGE?object=ANAGLYCOLYSIS-PWY ANAGLYCOLYSIS-PWY]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-2723]], trehalose degradation V: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2723 PWY-2723]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[P122-PWY]], heterolactic fermentation: [http://metacyc.org/META/NEW-IMAGE?object=P122-PWY P122-PWY]
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** '''14''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-2722]], trehalose degradation IV: [http://metacyc.org/META/NEW-IMAGE?object=PWY-2722 PWY-2722]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5661]], GDP-glucose biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5661 PWY-5661]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* Category: [[orthology]]
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** Source: [[orthology-synechocystis]]
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*** Tool: [[pantograph]]
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** Source: [[orthology-esiliculosus]]
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*** Tool: [[pantograph]]
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* Category: [[annotation]]
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** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
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*** Tool: [[pathwaytools]]
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*** Assignment: automated-name-match
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** Source: [[annotation-experimental_annotation]]
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== Pathways associated ==
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*** Tool: [[pathwaytools]]
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== External links  ==
 
== External links  ==
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* RHEA:
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{{#set: right end position=380}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17825 17825]
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{{#set: transcription direction=POSITIVE}}
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* LIGAND-RXN:
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{{#set: left end position=119}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01786 R01786]
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{{#set: centisome position=2.517453    }}
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** [http://www.genome.jp/dbget-bin/www_bget?R00299 R00299]
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{{#set: reaction associated=RXN0-1281}}
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* UNIPROT:
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** [http://www.uniprot.org/uniprot/P0A6V8 P0A6V8]
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** [http://www.uniprot.org/uniprot/P21908 P21908]
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** [http://www.uniprot.org/uniprot/P64254 P64254]
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** [http://www.uniprot.org/uniprot/Q8XDH5 Q8XDH5]
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** [http://www.uniprot.org/uniprot/Q8XDH4 Q8XDH4]
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** [http://www.uniprot.org/uniprot/Q9CE25 Q9CE25]
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** [http://www.uniprot.org/uniprot/P52792 P52792]
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** [http://www.uniprot.org/uniprot/Q9V2Z6 Q9V2Z6]
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** [http://www.uniprot.org/uniprot/Q7M537 Q7M537]
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** [http://www.uniprot.org/uniprot/P17709 P17709]
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** [http://www.uniprot.org/uniprot/Q04409 Q04409]
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** [http://www.uniprot.org/uniprot/Q92407 Q92407]
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** [http://www.uniprot.org/uniprot/O31392 O31392]
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{{#set: direction=LEFT-TO-RIGHT}}
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{{#set: common name=glucokinase}}
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{{#set: common name=hexokinase}}
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{{#set: ec number=EC-2.7.1.1}}
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{{#set: ec number=EC-2.7.1.2}}
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{{#set: gene associated=Tiso_gene_3107|Tiso_gene_1303}}
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{{#set: in pathway=PWY-7238|GLYCOCAT-PWY|TREDEGLOW-PWY|P124-PWY|PWY-7385|PWY0-1182|PWY-5514|GLUCOSE1PMETAB-PWY|PWY-621|ANAGLYCOLYSIS-PWY|PWY-2723|P122-PWY|PWY-2722|PWY-5661}}
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{{#set: reconstruction category=orthology|annotation}}
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{{#set: reconstruction source=annotation-in-silico_annotation|annotation-experimental_annotation|orthology-synechocystis|orthology-esiliculosus}}
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{{#set: reconstruction tool=pantograph|pathwaytools}}
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Revision as of 16:08, 21 March 2018

Gene Tiso_gene_15890

  • right end position:
    • 380
  • transcription direction:
    • POSITIVE
  • left end position:
    • 119
  • centisome position:
    • 2.517453
  • Synonym(s):

Reactions associated

Pathways associated

External links

Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=SAMDECARB-RXN&oldid=39090"