Difference between revisions of "Apo-Transcarboxylases"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOLEUCINE--TRNA-LIGASE-RXN ISOLEUCINE--TRNA-LIGASE-RXN] == * direction: ** LEFT-TO-RIGHT * common...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-14271 CPD-14271] == * smiles: ** CCCCCCCCCCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([...")
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Metabolite]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ISOLEUCINE--TRNA-LIGASE-RXN ISOLEUCINE--TRNA-LIGASE-RXN] ==
+
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-14271 CPD-14271] ==
−
* direction:
+
* smiles:
−
** LEFT-TO-RIGHT
+
** CCCCCCCCCCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23))))=O
 
* common name:
 
* common name:
−
** isoleucine--trna_cytoplasmic
+
** 3-oxoicosanoyl-CoA
−
** isoleucine--trna_ligase
+
* inchi key:
−
* ec number:
+
** InChIKey=FYBVHNZJDVUVLJ-IBYUJNRCSA-J
−
** [http://enzyme.expasy.org/EC/6.1.1.5 EC-6.1.1.5]
+
* molecular weight:
 +
** 1072.006   
 
* Synonym(s):
 
* Synonym(s):
  
−
== Reaction Formula ==
+
== Reaction(s) known to consume the compound ==
−
* With identifiers:
+
* [[RXN-13298]]
−
** 1 [[ILE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[ILE-tRNAs]][c] '''=>''' 1 [[PPI]][c] '''+''' 1 [[Charged-ILE-tRNAs]][c] '''+''' 1 [[AMP]][c]
+
== Reaction(s) known to produce the compound ==
−
* With common name(s):
+
* [[RXN-13294]]
−
** 1 L-isoleucine[c] '''+''' 1 ATP[c] '''+''' 1 a tRNAile[c] '''=>''' 1 diphosphate[c] '''+''' 1 an L-isoleucyl-[tRNAile][c] '''+''' 1 AMP[c]
+
== Reaction(s) of unknown directionality ==
−
 
+
−
== Genes associated with this reaction  ==
+
−
Genes have been associated with this reaction based on different elements listed below.
+
−
* [[Tiso_gene_12496]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
* [[Tiso_gene_11779]]
+
−
** IN-SILICO_ANNOTATION
+
−
***EC-NUMBER
+
−
** EXPERIMENTAL_ANNOTATION
+
−
***EC-NUMBER
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
== Pathways  ==
+
−
* [[TRNA-CHARGING-PWY]], tRNA charging: [http://metacyc.org/META/NEW-IMAGE?object=TRNA-CHARGING-PWY TRNA-CHARGING-PWY]
+
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[orthology]]
+
−
** Source: [[orthology-esiliculosus]]
+
−
*** Tool: [[pantograph]]
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
* RHEA:
+
* PUBCHEM:
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11060 11060]
+
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=70678676 70678676]
−
* LIGAND-RXN:
+
* CHEBI:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03656 R03656]
+
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=65115 65115]
−
* UNIPROT:
+
{{#set: smiles=CCCCCCCCCCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23))))=O}}
−
** [http://www.uniprot.org/uniprot/P18330 P18330]
+
{{#set: common name=3-oxoicosanoyl-CoA}}
−
** [http://www.uniprot.org/uniprot/P36422 P36422]
+
{{#set: inchi key=InChIKey=FYBVHNZJDVUVLJ-IBYUJNRCSA-J}}
−
** [http://www.uniprot.org/uniprot/O29622 O29622]
+
{{#set: molecular weight=1072.006    }}
−
** [http://www.uniprot.org/uniprot/P47587 P47587]
+
{{#set: consumed by=RXN-13298}}
−
** [http://www.uniprot.org/uniprot/Q9ZCU4 Q9ZCU4]
+
{{#set: produced by=RXN-13294}}
−
** [http://www.uniprot.org/uniprot/P46213 P46213]
+
−
** [http://www.uniprot.org/uniprot/P41257 P41257]
+
−
** [http://www.uniprot.org/uniprot/Q9JVY4 Q9JVY4]
+
−
** [http://www.uniprot.org/uniprot/Q58357 Q58357]
+
−
** [http://www.uniprot.org/uniprot/O83466 O83466]
+
−
** [http://www.uniprot.org/uniprot/Q9Z972 Q9Z972]
+
−
** [http://www.uniprot.org/uniprot/P56456 P56456]
+
−
** [http://www.uniprot.org/uniprot/O58792 O58792]
+
−
** [http://www.uniprot.org/uniprot/O84022 O84022]
+
−
** [http://www.uniprot.org/uniprot/Q9ZJJ1 Q9ZJJ1]
+
−
** [http://www.uniprot.org/uniprot/O66651 O66651]
+
−
** [http://www.uniprot.org/uniprot/Q9CEH8 Q9CEH8]
+
−
** [http://www.uniprot.org/uniprot/O27428 O27428]
+
−
** [http://www.uniprot.org/uniprot/Q45477 Q45477]
+
−
** [http://www.uniprot.org/uniprot/O51773 O51773]
+
−
** [http://www.uniprot.org/uniprot/P46207 P46207]
+
−
** [http://www.uniprot.org/uniprot/P41252 P41252]
+
−
** [http://www.uniprot.org/uniprot/P41972 P41972]
+
−
** [http://www.uniprot.org/uniprot/P48526 P48526]
+
−
** [http://www.uniprot.org/uniprot/P75258 P75258]
+
−
** [http://www.uniprot.org/uniprot/P73505 P73505]
+
−
** [http://www.uniprot.org/uniprot/Q49024 Q49024]
+
−
** [http://www.uniprot.org/uniprot/Q49074 Q49074]
+
−
** [http://www.uniprot.org/uniprot/P43824 P43824]
+
−
** [http://www.uniprot.org/uniprot/P09436 P09436]
+
−
** [http://www.uniprot.org/uniprot/P00956 P00956]
+
−
** [http://www.uniprot.org/uniprot/Q94425 Q94425]
+
−
{{#set: direction=LEFT-TO-RIGHT}}
+
−
{{#set: common name=isoleucine--trna_cytoplasmic}}
+
−
{{#set: common name=isoleucine--trna_ligase}}
+
−
{{#set: ec number=EC-6.1.1.5}}
+
−
{{#set: gene associated=Tiso_gene_12496|Tiso_gene_11779}}
+
−
{{#set: in pathway=TRNA-CHARGING-PWY}}
+
−
{{#set: reconstruction category=orthology|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation|orthology-esiliculosus}}
+
−
{{#set: reconstruction tool=pantograph|pathwaytools}}
+

Revision as of 16:09, 21 March 2018

Metabolite CPD-14271

  • smiles:
    • CCCCCCCCCCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23))))=O
  • common name:
    • 3-oxoicosanoyl-CoA
  • inchi key:
    • InChIKey=FYBVHNZJDVUVLJ-IBYUJNRCSA-J
  • molecular weight:
    • 1072.006
  • Synonym(s):

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

"CCCCCCCCCCCCCCCCCC(=O)CC(=O)SCCNC(=O)CCNC(C(O)C(C)(C)COP([O-])(=O)OP([O-])(=O)OCC1(C(OP(=O)([O-])[O-])C(O)C(O1)N3(C=NC2(C(N)=NC=NC=23))))=O" cannot be used as a page name in this wiki.



Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=Apo-Transcarboxylases&oldid=39129"