Difference between revisions of "PHOSPHORIBULOKINASE-RXN"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=6.3.5.7-RXN 6.3.5.7-RXN] == * direction: ** LEFT-TO-RIGHT * common name: ** Glutamyl-tRNA(Gln) amid...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11502 RXN-11502] == * direction: ** LEFT-TO-RIGHT * common name: ** alpha-galactosidase * ec nu...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=6.3.5.7-RXN 6.3.5.7-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-11502 RXN-11502] ==
 
* direction:
 
* direction:
 
** LEFT-TO-RIGHT
 
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** Glutamyl-tRNA(Gln) amidotransferase subunit A
+
** alpha-galactosidase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/6.3.5.7 EC-6.3.5.7]
+
** [http://enzyme.expasy.org/EC/3.2.1 EC-3.2.1]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[ATP]][c] '''+''' 1 [[GLN]][c] '''+''' 1 [[L-glutamyl-tRNAGln]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PROTON]][c] '''+''' 1 [[Charged-GLN-tRNAs]][c] '''+''' 1 [[Pi]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[GLT]][c]
+
** 1 [[CPD-1099]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[ALPHA-D-GALACTOSE]][c] '''+''' 1 [[SUCROSE]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 ATP[c] '''+''' 1 L-glutamine[c] '''+''' 1 an L-glutamyl-[tRNAGln][c] '''+''' 1 H2O[c] '''=>''' 1 H+[c] '''+''' 1 an L-glutaminyl-[tRNAgln][c] '''+''' 1 phosphate[c] '''+''' 1 ADP[c] '''+''' 1 L-glutamate[c]
+
** 1 raffinose[c] '''+''' 1 H2O[c] '''=>''' 1 α-D-galactose[c] '''+''' 1 sucrose[c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_12219]]
+
* Gene: [[Tiso_gene_16101]]
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-creinhardtii]]
−
***AUTOMATED-NAME-MATCH
+
* Gene: [[Tiso_gene_4615]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-creinhardtii]]
 +
* Gene: [[Tiso_gene_3392]]
 +
** Source: [[annotation-in-silico_annotation]]
 +
*** Assignment: AUTOMATED-NAME-MATCH
 +
** Source: [[orthology-athaliana]]
 +
* Gene: [[Tiso_gene_8673]]
 +
** Source: [[orthology-creinhardtii]]
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5921]], glutaminyl-tRNAgln biosynthesis via transamidation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-5921 PWY-5921]
+
* [[PWY-6527]], stachyose degradation: [http://metacyc.org/META/NEW-IMAGE?object=PWY-6527 PWY-6527]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 +
* Category: [[orthology]]
 +
** Source: [[orthology-athaliana]]
 +
*** Tool: [[pantograph]]
 +
** Source: [[orthology-creinhardtii]]
 +
*** Tool: [[pantograph]]
 
* Category: [[annotation]]
 
* Category: [[annotation]]
−
** Source: [[annotation-experimental_annotation]]
+
** Source: [[annotation-in-silico_annotation]]
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17521 17521]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R03905 R03905]
+
** [http://www.genome.jp/dbget-bin/www_bget?R01103 R01103]
 
{{#set: direction=LEFT-TO-RIGHT}}
 
{{#set: direction=LEFT-TO-RIGHT}}
−
{{#set: common name=Glutamyl-tRNA(Gln) amidotransferase subunit A}}
+
{{#set: common name=alpha-galactosidase}}
−
{{#set: ec number=EC-6.3.5.7}}
+
{{#set: ec number=EC-3.2.1}}
−
{{#set: gene associated=Tiso_gene_12219}}
+
{{#set: gene associated=Tiso_gene_16101|Tiso_gene_4615|Tiso_gene_3392|Tiso_gene_8673}}
−
{{#set: in pathway=PWY-5921}}
+
{{#set: in pathway=PWY-6527}}
−
{{#set: reconstruction category=annotation}}
+
{{#set: reconstruction category=orthology|annotation}}
−
{{#set: reconstruction source=annotation-experimental_annotation}}
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-athaliana|orthology-creinhardtii}}
−
{{#set: reconstruction tool=pathwaytools}}
+
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:09, 21 March 2018

Reaction RXN-11502

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • alpha-galactosidase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

  • PWY-6527, stachyose degradation: PWY-6527
    • 7 reactions found over 7 reactions in the full pathway

Reconstruction information

External links





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