Difference between revisions of "Pathwaytools"

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(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGSUCCINLYA-RXN ARGSUCCINLYA-RXN] == * direction: ** REVERSIBLE * common name: ** argininosuccinat...")
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLGLUCOSAMACYLTRANS-RXN UDPNACETYLGLUCOSAMACYLTRANS-RXN] == * direction: ** LEFT-TO-RIGHT *...")
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[[Category:Reaction]]
 
[[Category:Reaction]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=ARGSUCCINLYA-RXN ARGSUCCINLYA-RXN] ==
+
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=UDPNACETYLGLUCOSAMACYLTRANS-RXN UDPNACETYLGLUCOSAMACYLTRANS-RXN] ==
 
* direction:
 
* direction:
−
** REVERSIBLE
+
** LEFT-TO-RIGHT
 
* common name:
 
* common name:
−
** argininosuccinate_lyase
+
** acyl---udp-n-acetylglucosamine_acyltransferase
 
* ec number:
 
* ec number:
−
** [http://enzyme.expasy.org/EC/4.3.2.1 EC-4.3.2.1]
+
** [http://enzyme.expasy.org/EC/2.3.1.129 EC-2.3.1.129]
 
* Synonym(s):
 
* Synonym(s):
  
 
== Reaction Formula ==
 
== Reaction Formula ==
 
* With identifiers:
 
* With identifiers:
−
** 1 [[L-ARGININO-SUCCINATE]][c] '''<=>''' 1 [[ARG]][c] '''+''' 1 [[FUM]][c]
+
** 1 [[R-3-hydroxymyristoyl-ACPs]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''=>''' 1 [[UDP-OHMYR-ACETYLGLUCOSAMINE]][c] '''+''' 1 [[ACP]][c]
 
* With common name(s):
 
* With common name(s):
−
** 1 L-arginino-succinate[c] '''<=>''' 1 L-arginine[c] '''+''' 1 fumarate[c]
+
** 1 a (3R)-3-hydroxymyristoyl-[acp][c] '''+''' 1 UDP-N-acetyl-&alpha;-D-glucosamine[c] '''=>''' 1 UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-&alpha;-D-glucosamine[c] '''+''' 1 a holo-[acyl-carrier protein][c]
  
 
== Genes associated with this reaction  ==
 
== Genes associated with this reaction  ==
 
Genes have been associated with this reaction based on different elements listed below.
 
Genes have been associated with this reaction based on different elements listed below.
−
* [[Tiso_gene_2485]]
+
* Gene: [[Tiso_gene_19198]]
−
** IN-SILICO_ANNOTATION
+
** Source: [[annotation-in-silico_annotation]]
−
***EC-NUMBER
+
*** Assignment: EC-NUMBER
−
** EXPERIMENTAL_ANNOTATION
+
** Source: [[orthology-synechocystis]]
−
***EC-NUMBER
+
−
** [[pantograph]]-[[athaliana]]
+
−
** [[pantograph]]-[[synechocystis]]
+
−
** [[pantograph]]-[[esiliculosus]]
+
−
** [[pantograph]]-[[creinhardtii]]
+
 
== Pathways  ==
 
== Pathways  ==
−
* [[PWY-5154]], L-arginine biosynthesis III (via N-acetyl-L-citrulline): [http://metacyc.org/META/NEW-IMAGE?object=PWY-5154 PWY-5154]
+
* [[NAGLIPASYN-PWY]], lipid IVA biosynthesis: [http://metacyc.org/META/NEW-IMAGE?object=NAGLIPASYN-PWY NAGLIPASYN-PWY]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
−
* [[ARGSYN-PWY]], L-arginine biosynthesis I (via L-ornithine): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYN-PWY ARGSYN-PWY]
+
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-4984]], urea cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4984 PWY-4984]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[ARGSYNBSUB-PWY]], L-arginine biosynthesis II (acetyl cycle): [http://metacyc.org/META/NEW-IMAGE?object=ARGSYNBSUB-PWY ARGSYNBSUB-PWY]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-4983]], L-citrulline-nitric oxide cycle: [http://metacyc.org/META/NEW-IMAGE?object=PWY-4983 PWY-4983]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7400]], L-arginine biosynthesis IV (archaebacteria): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7400 PWY-7400]
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
 
== Reconstruction information  ==
 
== Reconstruction information  ==
 
* Category: [[orthology]]
 
* Category: [[orthology]]
−
** Source: [[orthology-athaliana]]
 
−
*** Tool: [[pantograph]]
 
−
** Source: [[orthology-creinhardtii]]
 
−
*** Tool: [[pantograph]]
 
 
** Source: [[orthology-synechocystis]]
 
** Source: [[orthology-synechocystis]]
 
*** Tool: [[pantograph]]
 
*** Tool: [[pantograph]]
−
** Source: [[orthology-esiliculosus]]
 
−
*** Tool: [[pantograph]]
 
−
* Category: [[manual]]
 
−
** Source: [[manual-primary_network]]
 
 
* Category: [[annotation]]
 
* Category: [[annotation]]
 
** Source: [[annotation-in-silico_annotation]]
 
** Source: [[annotation-in-silico_annotation]]
−
*** Tool: [[pathwaytools]]
 
−
** Source: [[annotation-experimental_annotation]]
 
 
*** Tool: [[pathwaytools]]
 
*** Tool: [[pathwaytools]]
 
== External links  ==
 
== External links  ==
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24020 24020]
 
 
* LIGAND-RXN:
 
* LIGAND-RXN:
−
** [http://www.genome.jp/dbget-bin/www_bget?R01086 R01086]
+
** [http://www.genome.jp/dbget-bin/www_bget?R04567 R04567]
 
* UNIPROT:
 
* UNIPROT:
−
** [http://www.uniprot.org/uniprot/P50987 P50987]
+
** [http://www.uniprot.org/uniprot/Q9PIM1 Q9PIM1]
−
** [http://www.uniprot.org/uniprot/Q46104 Q46104]
+
** [http://www.uniprot.org/uniprot/Q9JX26 Q9JX26]
−
** [http://www.uniprot.org/uniprot/P11447 P11447]
+
** [http://www.uniprot.org/uniprot/P43887 P43887]
−
** [http://www.uniprot.org/uniprot/Q9JVG7 Q9JVG7]
+
** [http://www.uniprot.org/uniprot/P32200 P32200]
−
** [http://www.uniprot.org/uniprot/Q9CJ76 Q9CJ76]
+
** [http://www.uniprot.org/uniprot/P32201 P32201]
−
** [http://www.uniprot.org/uniprot/P44314 P44314]
+
** [http://www.uniprot.org/uniprot/P0A722 P0A722]
−
** [http://www.uniprot.org/uniprot/Q58201 Q58201]
+
{{#set: direction=LEFT-TO-RIGHT}}
−
** [http://www.uniprot.org/uniprot/P33110 P33110]
+
{{#set: common name=acyl---udp-n-acetylglucosamine_acyltransferase}}
−
** [http://www.uniprot.org/uniprot/Q01592 Q01592]
+
{{#set: ec number=EC-2.3.1.129}}
−
** [http://www.uniprot.org/uniprot/P40369 P40369]
+
{{#set: gene associated=Tiso_gene_19198}}
−
** [http://www.uniprot.org/uniprot/P50988 P50988]
+
{{#set: in pathway=NAGLIPASYN-PWY}}
−
** [http://www.uniprot.org/uniprot/P73257 P73257]
+
{{#set: reconstruction category=orthology|annotation}}
−
** [http://www.uniprot.org/uniprot/P50514 P50514]
+
{{#set: reconstruction source=annotation-in-silico_annotation|orthology-synechocystis}}
−
** [http://www.uniprot.org/uniprot/P04076 P04076]
+
−
** [http://www.uniprot.org/uniprot/P04424 P04424]
+
−
** [http://www.uniprot.org/uniprot/P20673 P20673]
+
−
{{#set: direction=REVERSIBLE}}
+
−
{{#set: common name=argininosuccinate_lyase}}
+
−
{{#set: ec number=EC-4.3.2.1}}
+
−
{{#set: gene associated=Tiso_gene_2485}}
+
−
{{#set: in pathway=PWY-5154|ARGSYN-PWY|PWY-4984|ARGSYNBSUB-PWY|PWY-4983|PWY-7400}}
+
−
{{#set: reconstruction category=orthology|manual|annotation}}
+
−
{{#set: reconstruction source=annotation-experimental_annotation|orthology-esiliculosus|annotation-in-silico_annotation|orthology-athaliana|orthology-synechocystis|manual-primary_network|orthology-creinhardtii}}
+
 
{{#set: reconstruction tool=pantograph|pathwaytools}}
 
{{#set: reconstruction tool=pantograph|pathwaytools}}

Revision as of 16:09, 21 March 2018

Reaction UDPNACETYLGLUCOSAMACYLTRANS-RXN

  • direction:
    • LEFT-TO-RIGHT
  • common name:
    • acyl---udp-n-acetylglucosamine_acyltransferase
  • ec number:
  • Synonym(s):

Reaction Formula

Genes associated with this reaction

Genes have been associated with this reaction based on different elements listed below.

Pathways

Reconstruction information

External links





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