Difference between revisions of "FARNESYL-PP"

From metabolic_network
Jump to: navigation, search
(Created page with "Category:Reaction == Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17874 RXN-17874] == * direction: ** LEFT-TO-RIGHT * common name: ** methionine_aminopeptidase *...")
(Created page with "Category:Metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=FARNESYL-PP FARNESYL-PP] == * smiles: ** CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C *...")
 
Line 1: Line 1:
−
[[Category:Reaction]]
+
[[Category:Metabolite]]
−
== Reaction [http://metacyc.org/META/NEW-IMAGE?object=RXN-17874 RXN-17874] ==
+
== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=FARNESYL-PP FARNESYL-PP] ==
−
* direction:
+
* smiles:
−
** LEFT-TO-RIGHT
+
** CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C
 
* common name:
 
* common name:
−
** methionine_aminopeptidase
+
** (2E,6E)-farnesyl diphosphate
−
* ec number:
+
* inchi key:
−
** [http://enzyme.expasy.org/EC/3.4.11.18 EC-3.4.11.18]
+
** InChIKey=VWFJDQUYCIWHTN-YFVJMOTDSA-K
 +
* molecular weight:
 +
** 379.306   
 
* Synonym(s):
 
* Synonym(s):
 +
** 2-trans,6-trans-farnesyl diphosphate
 +
** FPP
 +
** trans, trans-farnesyl diphosphate
 +
** farnesyl-PP
 +
** farnesyl pyrophosphate
 +
** ω,E,E-farnesyl diphosphate
 +
** farnesyl diphosphate
 +
** (E,E)-farnesyl diphosphate
 +
** all-trans-farnesyl diphosphate
 +
** C15-PP
  
−
== Reaction Formula ==
+
== Reaction(s) known to consume the compound ==
−
* With identifiers:
+
* [[RXN-8999]]
−
** 1 [[L-methionyl-L-cysteinyl-Protein]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[N-terminal-L-cysteine]][c] '''+''' 1 [[MET]][c]
+
* [[GGPS]]
−
* With common name(s):
+
* [[FARNESYLTRANSTRANSFERASE-RXN]]
−
** 1 an N-terminal-L-methionyl-L-cysteinyl-[protein][c] '''+''' 1 H2O[c] '''=>''' 1 an N-terminal L-cysteinyl-[protein][c] '''+''' 1 L-methionine[c]
+
== Reaction(s) known to produce the compound ==
−
 
+
* [[FPPSYN-RXN]]
−
== Genes associated with this reaction  ==
+
== Reaction(s) of unknown directionality ==
−
Genes have been associated with this reaction based on different elements listed below.
+
* [[2.5.1.58-RXN]]
−
* Gene: [[Tiso_gene_4247]]
+
* [[RXN0-5180]]
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
* Gene: [[Tiso_gene_5715]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Assignment: AUTOMATED-NAME-MATCH
+
−
== Pathways  ==
+
−
* [[PWY-7799]], Arg/N-end rule pathway (eukaryotic): [http://metacyc.org/META/NEW-IMAGE?object=PWY-7799 PWY-7799]
+
−
** '''8''' reactions found over '''14''' reactions in the full pathway
+
−
* [[PWY-7800]], Ac/N-end rule pathway: [http://metacyc.org/META/NEW-IMAGE?object=PWY-7800 PWY-7800]
+
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
−
== Reconstruction information  ==
+
−
* Category: [[annotation]]
+
−
** Source: [[annotation-experimental_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
−
** Source: [[annotation-in-silico_annotation]]
+
−
*** Tool: [[pathwaytools]]
+
 
== External links  ==
 
== External links  ==
−
{{#set: direction=LEFT-TO-RIGHT}}
+
* CAS : 13058-04-3
−
{{#set: common name=methionine_aminopeptidase}}
+
* BIGG : frdp
−
{{#set: ec number=EC-3.4.11.18}}
+
* PUBCHEM:
−
{{#set: gene associated=Tiso_gene_4247|Tiso_gene_5715}}
+
** [http://pubchem.ncbi.nlm.nih.gov/summary/summary.cgi?cid=15983959 15983959]
−
{{#set: in pathway=PWY-7799|PWY-7800}}
+
* KNAPSACK : C00007268
−
{{#set: reconstruction category=annotation}}
+
* HMDB : HMDB00961
−
{{#set: reconstruction source=annotation-experimental_annotation|annotation-in-silico_annotation}}
+
* LIGAND-CPD:
−
{{#set: reconstruction tool=pathwaytools}}
+
** [http://www.genome.jp/dbget-bin/www_bget?C00448 C00448]
 +
* CHEMSPIDER:
 +
** [http://www.chemspider.com/Chemical-Structure.11633047.html 11633047]
 +
* CHEBI:
 +
** [http://www.ebi.ac.uk/chebi/searchId.do?chebiId=175763 175763]
 +
* METABOLIGHTS : MTBLC175763
 +
{{#set: smiles=CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C}}
 +
{{#set: common name=(2E,6E)-farnesyl diphosphate}}
 +
{{#set: inchi key=InChIKey=VWFJDQUYCIWHTN-YFVJMOTDSA-K}}
 +
{{#set: molecular weight=379.306    }}
 +
{{#set: common name=2-trans,6-trans-farnesyl diphosphate|FPP|trans, trans-farnesyl diphosphate|farnesyl-PP|farnesyl pyrophosphate|ω,E,E-farnesyl diphosphate|farnesyl diphosphate|(E,E)-farnesyl diphosphate|all-trans-farnesyl diphosphate|C15-PP}}
 +
{{#set: consumed by=RXN-8999|GGPS|FARNESYLTRANSTRANSFERASE-RXN}}
 +
{{#set: produced by=FPPSYN-RXN}}
 +
{{#set: reversible reaction associated=2.5.1.58-RXN|RXN0-5180}}

Latest revision as of 19:04, 21 March 2018

Metabolite FARNESYL-PP

  • smiles:
    • CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C
  • common name:
    • (2E,6E)-farnesyl diphosphate
  • inchi key:
    • InChIKey=VWFJDQUYCIWHTN-YFVJMOTDSA-K
  • molecular weight:
    • 379.306
  • Synonym(s):
    • 2-trans,6-trans-farnesyl diphosphate
    • FPP
    • trans, trans-farnesyl diphosphate
    • farnesyl-PP
    • farnesyl pyrophosphate
    • ω,E,E-farnesyl diphosphate
    • farnesyl diphosphate
    • (E,E)-farnesyl diphosphate
    • all-trans-farnesyl diphosphate
    • C15-PP

Reaction(s) known to consume the compound

Reaction(s) known to produce the compound

Reaction(s) of unknown directionality

External links

  • CAS : 13058-04-3
  • BIGG : frdp
  • PUBCHEM:
  • KNAPSACK : C00007268
  • HMDB : HMDB00961
  • LIGAND-CPD:
  • CHEMSPIDER:
  • CHEBI:
  • METABOLIGHTS : MTBLC175763
"CC(=CCCC(=CCCC(=CCOP(OP([O-])(=O)[O-])(=O)[O-])C)C)C" cannot be used as a page name in this wiki.




Retrieved from "http://gem-aureme.irisa.fr/tisogem/index.php?title=FARNESYL-PP&oldid=39277"